Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1318 ATGCAACTGCTACCAAATAATGATGAAGAAAATGAAGATGATATTATGGAACGTGTGCCCATTTTGAGTCAATTGGATTTTCGGCTACAGGCTGTGGAATCATCATCCTCTGCTGAGATTATCGCTATAGGGAGAGATAGCTCTGCTAGTGATGATGATTTACACAATATTAATGTTGATGAAACTTGTCATCTGGTGAATGTGGAGCAACCGCAATGTCGGATATGCCTCGAAACCGGAGGTGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTTCAGAGTGCAGAGCTATGTTTGTGTTACGCGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAGTTTCTCGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAGTTCTATGGAGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTATGCCATGGCTGTCTTGGCTATCATCTTGGTTGGTTTACTATATGGTTTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTATCCTGTCCTTGCTAAGCAGGAACTGACAAAGGAATATATAGTTGAAGATCGTGAACAAAACAAAAATGTTCCTGAACTGGACCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTACTAA 783 42.78 MQLLPNNDEENEDDIMERVPILSQLDFRLQAVESSSSAEIIAIGRDSSASDDDLHNINVDETCHLVNVEQPQCRICLETGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCSECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYPVLAKQELTKEYIVEDREQNKNVPELDPSHVMELRMLGLY 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9859853 9862725 - Sed0023760.3 Sed01g1318 700622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1318 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 125 IPR013083 -
Sed01g1318 260 ProSiteProfiles Zinc finger RING-CH-type profile. 65 127 IPR011016 GO:0008270(InterPro)
Sed01g1318 260 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 192 260 - -
Sed01g1318 260 CDD RING_CH-C4HC3_MARCH 73 121 - -
Sed01g1318 260 SMART ringv_2 72 121 IPR011016 GO:0008270(InterPro)
Sed01g1318 260 SUPERFAMILY RING/U-box 67 124 - -
Sed01g1318 260 Pfam RING-variant domain 73 111 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1316 Sed-Chr1:9859853 Sed01g1318 Sed-Chr1:9859853 3.90E-149 dispersed
Sed01g1318 Sed-Chr1:9859853 Sed06g0010 Sed-Chr6:104718 6.30E-83 dispersed
Sed01g1317 Sed-Chr1:9859853 Sed01g1318 Sed-Chr1:9859853 3.90E-149 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1318 - - - 0.0