Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1325 ATGTTTGATGCAAATGCTTTCCATGATGTTTTTGTAGAGTTTGAGCCTACCGTGTCGAAGATGGCTGTCAAAACAGCGCAATCATTTAGAGATCGGACGCAGGAATTCCAGAACATAACTGAGAGGCTAAAGAAGTCTTTCTCAGCTGGAACGGCAAGTGGTGGTTCAAGATCAGAAGAGCAGCGCCCTGCTGTGCTTCTGCAGTCTGAGTTTAATAAGAGGGCTTCCAAAATTGGGTTAGGGATACACCAGACGTCTCAGAAACTCTCCAAATTAGCAAAATTGGCTAAGAGGACTTCAGTTTTCGATGATCCAACAATGGATATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACAATGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAATTCTAGAAATGAAAGTGGAAACATGTCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTTATGAGCACCACAAAAGAATTTAAGGAAGTCCTAACCATGCGAACAGAAAACTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTGCTGCATCAAAGGAATCTACAAATCCTTTTGTGCGCCAACGTCCATTAGCTTCTAGGTCAGCTGCTGGTGCCTCAAGCGCATCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCAAAAACATCTCACGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAACAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAGAATGTAGAATCCACCATTCATGAGTTGGGCAATATCTTCAACCAGCTGGCAACTCTAGTTTCTGAACAAGGAGAGATTGCAATCAGGATCGACGAGAACATGGACGATACGTTGTCAAATGTGGAGGGGGCACAGGGAGCTTTGCTTAAGTATCTAAACGGTATATCATCAAATAGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTAATGGTTTTCCTATTTTTTGTGGCATAG 1065 42.72 MFDANAFHDVFVEFEPTVSKMAVKTAQSFRDRTQEFQNITERLKKSFSAGTASGGSRSEEQRPAVLLQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMDIQELTALIKQDITTMNSAVVDLQLLCNSRNESGNMSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSAASKESTNPFVRQRPLASRSAAGASSASPPPWAKASTSFSKTSHGKQVDGESQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELGNIFNQLATLVSEQGEIAIRIDENMDDTLSNVEGAQGALLKYLNGISSNRWLMIKIFFVLIFFLMVFLFFVA 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9894355 9903433 + Sed0005671.3 Sed01g1325 700629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1325 354 Pfam SNARE domain 298 350 IPR000727 -
Sed01g1325 354 SUPERFAMILY t-snare proteins 68 317 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed01g1325 354 Gene3D - 67 317 - -
Sed01g1325 354 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 262 324 IPR000727 -
Sed01g1325 354 ProSitePatterns Syntaxin / epimorphin family signature. 268 307 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed01g1325 354 SMART tSNARE_6 257 324 IPR000727 -
Sed01g1325 354 MobiDBLite consensus disorder prediction 191 255 - -
Sed01g1325 354 CDD SNARE_syntaxin5 265 343 - -
Sed01g1325 354 PANTHER SYNTAXIN 70 342 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed01g1325 354 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 26 45 IPR021538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1323 Sed-Chr1:9894355 Sed01g1325 Sed-Chr1:9894355 1.30E-170 dispersed
Sed01g1325 Sed-Chr1:9894355 Sed03g1567 Sed-Chr3:9893016 3.30E-159 dispersed
Sed01g1324 Sed-Chr1:9894355 Sed01g1325 Sed-Chr1:9894355 1.30E-170 tandem
Sed01g1325 Sed-Chr1:9894355 Sed01g1326 Sed-Chr1:9894355 4.90E-171 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1325 K08490 - csv:101203633 501.901