Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1325 | ATGTTTGATGCAAATGCTTTCCATGATGTTTTTGTAGAGTTTGAGCCTACCGTGTCGAAGATGGCTGTCAAAACAGCGCAATCATTTAGAGATCGGACGCAGGAATTCCAGAACATAACTGAGAGGCTAAAGAAGTCTTTCTCAGCTGGAACGGCAAGTGGTGGTTCAAGATCAGAAGAGCAGCGCCCTGCTGTGCTTCTGCAGTCTGAGTTTAATAAGAGGGCTTCCAAAATTGGGTTAGGGATACACCAGACGTCTCAGAAACTCTCCAAATTAGCAAAATTGGCTAAGAGGACTTCAGTTTTCGATGATCCAACAATGGATATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACAATGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAATTCTAGAAATGAAAGTGGAAACATGTCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTTATGAGCACCACAAAAGAATTTAAGGAAGTCCTAACCATGCGAACAGAAAACTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTGCTGCATCAAAGGAATCTACAAATCCTTTTGTGCGCCAACGTCCATTAGCTTCTAGGTCAGCTGCTGGTGCCTCAAGCGCATCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCAAAAACATCTCACGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAACAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAGAATGTAGAATCCACCATTCATGAGTTGGGCAATATCTTCAACCAGCTGGCAACTCTAGTTTCTGAACAAGGAGAGATTGCAATCAGGATCGACGAGAACATGGACGATACGTTGTCAAATGTGGAGGGGGCACAGGGAGCTTTGCTTAAGTATCTAAACGGTATATCATCAAATAGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTAATGGTTTTCCTATTTTTTGTGGCATAG | 1065 | 42.72 | MFDANAFHDVFVEFEPTVSKMAVKTAQSFRDRTQEFQNITERLKKSFSAGTASGGSRSEEQRPAVLLQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMDIQELTALIKQDITTMNSAVVDLQLLCNSRNESGNMSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSAASKESTNPFVRQRPLASRSAAGASSASPPPWAKASTSFSKTSHGKQVDGESQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELGNIFNQLATLVSEQGEIAIRIDENMDDTLSNVEGAQGALLKYLNGISSNRWLMIKIFFVLIFFLMVFLFFVA | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 9894355 | 9903433 | + | Sed0005671.3 | Sed01g1325 | 700629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1325 | 354 | Pfam | SNARE domain | 298 | 350 | IPR000727 | - | |
Sed01g1325 | 354 | SUPERFAMILY | t-snare proteins | 68 | 317 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Sed01g1325 | 354 | Gene3D | - | 67 | 317 | - | - | |
Sed01g1325 | 354 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 262 | 324 | IPR000727 | - | |
Sed01g1325 | 354 | ProSitePatterns | Syntaxin / epimorphin family signature. | 268 | 307 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Sed01g1325 | 354 | SMART | tSNARE_6 | 257 | 324 | IPR000727 | - | |
Sed01g1325 | 354 | MobiDBLite | consensus disorder prediction | 191 | 255 | - | - | |
Sed01g1325 | 354 | CDD | SNARE_syntaxin5 | 265 | 343 | - | - | |
Sed01g1325 | 354 | PANTHER | SYNTAXIN | 70 | 342 | IPR045242 | GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Sed01g1325 | 354 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 26 | 45 | IPR021538 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1323 | Sed-Chr1:9894355 | Sed01g1325 | Sed-Chr1:9894355 | 1.30E-170 | dispersed | |
Sed01g1325 | Sed-Chr1:9894355 | Sed03g1567 | Sed-Chr3:9893016 | 3.30E-159 | dispersed | |
Sed01g1324 | Sed-Chr1:9894355 | Sed01g1325 | Sed-Chr1:9894355 | 1.30E-170 | tandem | |
Sed01g1325 | Sed-Chr1:9894355 | Sed01g1326 | Sed-Chr1:9894355 | 4.90E-171 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1325 | K08490 | - | csv:101203633 | 501.901 |