Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1330 ATGGATGTTCCCTCAGTGGAACTAAATTGTGAAACCGAAGAAGACTTGTACCCTTTATTAATGGCCAGGCCAGAAAATTTTAGCGGCAGTGAGCATATCGTTGACATAACTGGTACTGGTGATTCTGCAACTTCTAGTCGGAATGCAAACGGCTTAAATTCATCACAGCCTGAAGACAGACCTTCAAGTAGTACACGAGTTCCCTTGTCTCAACCTTCAATTTCTACTGCTGAATCAAATTCTAGAAATGCCTCATTCATAAGAAGAGGAGATGCGCGGCGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTATTATCACTTTCAAAGAACGAAAAACCCCGTGCTCCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTCCAGAACAAGATTCTCATCAATCCAGTCAAAATTCTACTCGCATTAATGTTCCTGCTGGCCCGTTCTCTGTTTCAGTTTCTAGGGCATCCGAAGGGGAAGAACTTCATCATCCTGCCCCATCCCCTAGAGGCAGTCAAGGGTCAGGAGTATTGACAGCAAGATTAAAAGTATTGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTCGCTGTTTGGTTTGTAGTTGGTAATGTTTGGATCTTTGGAGGGCATTCATCTGCCTCTGAGGCTCCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGTTATGCCATGCCCTTCATTCTCTGTGTTACCATATGCTGTTGTCTACCTTGCATTATTTCCATTCTTGGGTTCAGAGAAGACTTGACACAGACTCGAGGAGCCACGACAGAATCTATTAATGCATTGCCAACTTATAAGTTTAAGCTGAAAAAATGTAGAAGTGGAGATGATAGAGAAAACAACTCTGGATCTGGTGAAGGAGGAGGGGTTGTGGCTGCAGGAACTGAAAAAGAACGAGTGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGTTTGTCGAAATATGCCAACAATGATGAACTGAGGGAGTTGCCATGTTCTCACTTTCTCCACAAGGAATGTGTAGATAAATGGCTGAAGATCAACGCGCTGTGCCCGCTTTGCAAAACGGAGATTGTCGAGAATACTGGCTCTCTTGAGGGGACAAATAGACGACAACAACAGGTTGATTAA 1266 42.97 MDVPSVELNCETEEDLYPLLMARPENFSGSEHIVDITGTGDSATSSRNANGLNSSQPEDRPSSSTRVPLSQPSISTAESNSRNASFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQAPEQDSHQSSQNSTRINVPAGPFSVSVSRASEGEELHHPAPSPRGSQGSGVLTARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKLKKCRSGDDRENNSGSGEGGGVVAAGTEKERVISGEDAVCCICLSKYANNDELRELPCSHFLHKECVDKWLKINALCPLCKTEIVENTGSLEGTNRRQQQVD 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9909059 9913219 - Sed0013992.3 Sed01g1330 700634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1330 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 414 IPR013083 -
Sed01g1330 421 MobiDBLite consensus disorder prediction 32 86 - -
Sed01g1330 421 FunFam E3 ubiquitin-protein ligase 342 409 - -
Sed01g1330 421 SMART ring_2 359 399 IPR001841 -
Sed01g1330 421 MobiDBLite consensus disorder prediction 31 92 - -
Sed01g1330 421 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 403 - -
Sed01g1330 421 ProSiteProfiles Zinc finger RING-type profile. 359 400 IPR001841 -
Sed01g1330 421 Pfam Ring finger domain 359 400 IPR001841 -
Sed01g1330 421 SUPERFAMILY RING/U-box 351 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1328 Sed-Chr1:9909059 Sed01g1330 Sed-Chr1:9909059 5.20E-244 dispersed
Sed01g1330 Sed-Chr1:9909059 Sed03g1568 Sed-Chr3:9906589 5.60E-206 dispersed
Sed01g1329 Sed-Chr1:9909059 Sed01g1330 Sed-Chr1:9909059 5.20E-244 tandem
Sed01g1330 Sed-Chr1:9909059 Sed01g1331 Sed-Chr1:9909059 5.20E-244 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1330 - - - 0.0