Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1333 ATGATGAAAGAGCTTAAGTTTTCTGCGAGAATCACACGCTCTCGGTCGAATTCCTCGAGTAGACTGGGAGCTATTTCACCATTGTTACAACTTTCAGTTAAAGAACTGCACAAACGAGATCACGTAGCAAATTATGAACGAGCACAGCTAGATGAAAGTAATGCTCCTGCAACTATCAATGTTGGCGTTCGGCGCAAAAGAAGAGCAGTGCTCACAGATGTTACTAACACGTCTTGTGAGAGCAGTAATCTGGATTGCTTGCATGCTTCTAAAATTCAGGTTCTGGAGGTTGCACAAACAGAATTACTTGAAGATTCGTTCGTCAAAAGGATGGCAGAATCACAATGTACCTCTCCAACGATGAAGTTGGACAAAAAAGAGAAACAGTTTCGGAGTGTCATAGGATGCACAAATTCTGCGTTCCCTGTGCCTTCAGAATCGAAAAACCACCAAATGAAAGATGAGGCTACAGTTTGTGAGAAATTAAACCAACTTGGTACTTCGGATGCTGTTTCAAGCTCAGAAGATCCTAAAGCATGCACCCTATATGCCCATAATATATATGATACCAACCGTGTGTTAGAGCTTGATCAAAAGCCTTCTGCTAACTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGCATTCTAATTGACTGGCTGGTGGAGGTTTCTGAAGAATATAAACTGGTCTCTGACACACTTTACCTCACTGTGAATCTCATTGATCGGTTTCTCTCTCAAATTCAAATTGAAAGACATAGATTACAACTCCTTGGTGTTACTTGCATGTTAATTGCCTCTAAATATGAAGAAGTCAGTGCACCTTTTGTGGAAGAGTTTTGCCTCATCACAGACAGCACCTATACAAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTACTGAACTTGCTCAACTTTCAGCTCTCAGTTCCCACTACCAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACAGGCTTCTTGCAAGGAACGTTGCAAGGAGTTCGAGCATTTGACAAACTATCTAGCAGAGTTGACTCTTGGTGAGTACAGCTTTATCAGGTTTCTGCCTTCTGCAGTGGCTGCATCCGTCGTGTTCTTAGCCCAATGGATTCTCAATCAGCCAAATCACCCTTGGGATCCGGCTCTACAACATTATACAAATTACAGTGTCTCCGAGCTAAAAACTCCAGTACTTGCTTTGGAAGATCTAAGATTGAACTCTACAATTTGCCCTTTAAACGGCGTAGTCCAGAAGTATAGACAACAGAAGTTTGGGAGCGTGGCGAATTTAACCTCCAGTGAACCGGTTCTCTCAGCTTTCCAAAATTAG 1344 41.96 MMKELKFSARITRSRSNSSSRLGAISPLLQLSVKELHKRDHVANYERAQLDESNAPATINVGVRRKRRAVLTDVTNTSCESSNLDCLHASKIQVLEVAQTELLEDSFVKRMAESQCTSPTMKLDKKEKQFRSVIGCTNSAFPVPSESKNHQMKDEATVCEKLNQLGTSDAVSSSEDPKACTLYAHNIYDTNRVLELDQKPSANYMEKLQKYITPIMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFLSQIQIERHRLQLLGVTCMLIASKYEEVSAPFVEEFCLITDSTYTREEVLKMEGEVLNLLNFQLSVPTTKTFLRRFVQVAQASCKERCKEFEHLTNYLAELTLGEYSFIRFLPSAVAASVVFLAQWILNQPNHPWDPALQHYTNYSVSELKTPVLALEDLRLNSTICPLNGVVQKYRQQKFGSVANLTSSEPVLSAFQN 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9923179 9930175 - Sed0011844.1 Sed01g1333 700637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1333 447 ProSitePatterns Cyclins signature. 217 248 IPR048258 -
Sed01g1333 447 PANTHER CYCLINS 164 409 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed01g1333 447 PIRSF Cyclin_A_B_D_E 10 446 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed01g1333 447 Gene3D - 187 434 - -
Sed01g1333 447 SMART cyclin_7 222 306 IPR013763 -
Sed01g1333 447 SMART cyclin_7 319 407 IPR013763 -
Sed01g1333 447 Gene3D - 200 313 - -
Sed01g1333 447 FunFam Cyclin A1 303 434 - -
Sed01g1333 447 Pfam Cyclin, C-terminal domain 315 437 IPR004367 -
Sed01g1333 447 SMART Cyclin_C_2 315 438 IPR004367 -
Sed01g1333 447 FunFam Mitotic cyclin 6 200 300 - -
Sed01g1333 447 SUPERFAMILY Cyclin-like 314 436 IPR036915 -
Sed01g1333 447 SUPERFAMILY Cyclin-like 175 312 IPR036915 -
Sed01g1333 447 Pfam Cyclin, N-terminal domain 187 313 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1333 Sed-Chr1:9923179 Sed07g1518 Sed-Chr7:11915751 5.30E-98 dispersed
Sed01g1333 Sed-Chr1:9923179 Sed13g2048 Sed-Chr13:25269435 1.20E-100 wgd
Sed01g1333 Sed-Chr1:9923179 Sed05g1679 Sed-Chr5:30582433 3.70E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1333 K06627 - csv:101211578 669.848