Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1339 ATGCAGATGCTTCTAATGCAGAGACATGCCCAGCAGCAGCAGCAACAACAACAGCAGCAGCAACAACAACAGCAGCAACAGCATCAGCAGCAACAGCAGCCGCAACAGCAACAACAACAGACCCAGCAACAGCAACAGCAGCGAAGAGATGGAGGCCAACTCTTAAATGGAACTTCAAATGGTTTTGTTGGAAATGATCCTCTAATGCGCCAGAATCCTGGATCGGTAAATGCATTGGCTACAAAAATGTATGAGGACAGATTAAAACTGCCCCTTCAGAGGGATTCTCTAGATGATGCAGCTATGAAACAAAGATATGGGGAAAATGTTGGGCAGCTGTTGGACCAAAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACACAGTACAGCCGGGGGAATGTCTCCTCAAGTTCAGTCTCGCAGCCAGCAATTGCCAGGTTCCACACCGATGCAGGACATAAAAAGCGAGATCAACCCGGTATTGAATCCTAGAGCTGCAGGTCCCGAGGGATCACTGATGGGCATTCCTGGATCAAATCATGCTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACTGGGCTAGAGCAGCTTCGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGTCGCCTCAGGCATTTCCTCAGCTTCAGATGCTGACACCACAGCACCAACAACTTATGCTTGCACAGCAGAATTTAACATCACCTTCTGTTAATGACGAGGGTAGAAGATTGAGAATGCTTTTGAACAGTCGAATCACAAAAGATGGACTCTCAAATTCTGTTGGTGATGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTTTTGCCCCGTGGAGACAACACAGAAATGATCCTTAAGATAAAAATGGCTCAATTACAGCACCAACAACAGCAACAGCAGCAACAGAATAGTAGCCAGCAGCAACTTCAGCAGCATGCTCTTTCTAATCAACAATCACAAAGCTCAAACCACAATATGCATCAGCAAGAAAAGATTGGGGGTGCTGGCAGCGTCACTATGGATGGTAGCATGTCAAACTCATTTCGTGGAAATGACCAGGTTTCAAAAAATCAGACCGGTAGAAAGAGGAAACAGCCAGTGTCATCTTCAGGTCCAGCAAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCAGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGCGGCGGTTCATCTAAACCTTTGATGATGTTCAGCAGCGATGGTACTGGCACTTTTACATCTCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTTTGTTGAGGATGGATCTCTTGATGATAATGTCGAGTCTTTTTTATCCCATGATGATACGGATCCTAGAGATCCTGTAGGCCGGTGTATGGATGGCAGCAAAGGATTCACATTTACGGAGGTGAATTCTGTTAGAGCAAGCTCAAGCAAAGTCTCCTCTTGTCACTTTTCATCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGATAAAAAGGCTGTATTGTGGTATACAGAAAATTTAAAGCCAAAAACTTCACTTGAAGAACATGCTTCTATGATCACTGATGTTCGTTTCAGTCCTAGCATGCCCCGACTTGCAACATCTTCATTCGACAGAACCGTGAGGGTTTGGGATGCCGACAACCCTTGTTATTCCCTACGTACCTTTACGGGACATTCTGCTTCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGATGACCTTATCTGCTCTTGTGATGGCGACGGTGAGATTCGCTACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGCGTTACAGGTCAGCTGAGATTTCAACCTCGTCTCGGAAGGTACTTTGGTGCTGCTGTAGATAATGTCGTATCCATTTTTGATGTTGAGACACAAGCACGTCTGCATACATTACAGGGTCATACCAAAACGGTTAATTCTCTTTGCTGGGATCCGTCTGGAGAGTTCCTGGCATCCGTGAGCGAGGATTCTGTTCGAGTATGGACGCTTGCTTCAGGGAGTGAGGGCGAATCCATTCACGAGTTAAGCATTAAAGGAAATAAGTTCCACTCTTGCGTTTTCCATCCCACCTATTCTACATTACTGGTCATTGGATGTTACCAGTCGTTAGAGCTTTGGAATACGACCGAGAACAAGACGATGACTCTATCAGCTCATGAAGGTTTAATATCTGCCTTAGCAGTGTCTACAACGTCGGGTCTAGTTGCTTCGGCCAGTCACGACAAGTTTATCAAGCTGTGGAAGTAA 2385 46.0 MQMLLMQRHAQQQQQQQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGGQLLNGTSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDQNHASILKSAAATSQSSGQVLHSTAGGMSPQVQSRSQQLPGSTPMQDIKSEINPVLNPRAAGPEGSLMGIPGSNHAGNNLTLKGWPLTGLEQLRSGILQQQKPFIQSPQAFPQLQMLTPQHQQLMLAQQNLTSPSVNDEGRRLRMLLNSRITKDGLSNSVGDVPNVGSPLQAGSPLLPRGDNTEMILKIKMAQLQHQQQQQQQQNSSQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGGSSKPLMMFSSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGFTFTEVNSVRASSSKVSSCHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHASMITDVRFSPSMPRLATSSFDRTVRVWDADNPCYSLRTFTGHSASVMSLDFHPKKDDLICSCDGDGEIRYWNITNGSCAAVFKGVTGQLRFQPRLGRYFGAAVDNVVSIFDVETQARLHTLQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGSEGESIHELSIKGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEGLISALAVSTTSGLVASASHDKFIKLWK 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9968764 9979517 - Sed0005148.2 Sed01g1339 700643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1339 794 MobiDBLite consensus disorder prediction 356 416 - -
Sed01g1339 794 MobiDBLite consensus disorder prediction 34 74 - -
Sed01g1339 794 PANTHER TRANSCRIPTION ACTIVATOR MSS11 6 794 - GO:0005634(PANTHER)
Sed01g1339 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 552 587 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 SUPERFAMILY WD40 repeat-like 504 794 IPR036322 GO:0005515(InterPro)
Sed01g1339 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 510 551 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 552 587 - -
Sed01g1339 794 ProSitePatterns Trp-Asp (WD) repeats signature. 571 585 IPR019775 -
Sed01g1339 794 Coils Coil 306 326 - -
Sed01g1339 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 595 633 - -
Sed01g1339 794 MobiDBLite consensus disorder prediction 312 349 - -
Sed01g1339 794 MobiDBLite consensus disorder prediction 312 436 - -
Sed01g1339 794 CDD WD40 506 794 - -
Sed01g1339 794 Coils Coil 6 31 - -
Sed01g1339 794 Gene3D - 494 647 IPR015943 GO:0005515(InterPro)
Sed01g1339 794 Gene3D - 648 794 IPR015943 GO:0005515(InterPro)
Sed01g1339 794 Pfam WD domain, G-beta repeat 547 584 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 Pfam WD domain, G-beta repeat 759 793 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 Pfam WD domain, G-beta repeat 507 541 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 Pfam WD domain, G-beta repeat 673 707 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 Pfam WD domain, G-beta repeat 591 628 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 762 794 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 677 717 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 MobiDBLite consensus disorder prediction 132 159 - -
Sed01g1339 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 762 794 - -
Sed01g1339 794 SMART WD40_4 503 542 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 SMART WD40_4 755 794 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 SMART WD40_4 545 584 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 SMART WD40_4 670 708 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 SMART WD40_4 714 753 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 SMART WD40_4 588 628 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 SMART WD40_4 631 667 IPR001680 GO:0005515(InterPro)
Sed01g1339 794 MobiDBLite consensus disorder prediction 269 294 - -
Sed01g1339 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 677 713 - -
Sed01g1339 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 637 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1339 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1339 Sed-Chr1:9968764 Sed03g1576 Sed-Chr3:10008456 0.00E+00 dispersed
Sed01g1338 Sed-Chr1:9968764 Sed01g1339 Sed-Chr1:9968764 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53