Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1346 ATGTCTAGCGCCGTCGTGGTCGCTCATTCTAGCTCCTGGGCTCGCGCTCTCATCCACATCTCGCCGTACACTTTCTCCGCCCTCGGCATCGCCGTCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATTACGGGAAGCAGTTTGATTGGCGCGGCGATTAAAGCTCCTCGTATTACTTCGAAGAATTTGATTAGTGTGATTTTCTGTGAAGCTGTTGCTATATACGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGCCAGCATCTCAGATATATGCCCCCGAAAGTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATTGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGTAGCTGTGCACTATCAGATGCTCAAAACTCCTCTCTCTTCGTGAAGATTCTTGTAATCGAGATCTTTGGCAGTGCTCTTGGGTTGTTTGGAGTGATTGTTGGAATAATTATGTCTGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA 549 48.82 MSSAVVVAHSSSWARALIHISPYTFSALGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10048730 10051158 + Sed0016723.1 Sed01g1346 700650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1346 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Sed01g1346 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 9 175 - GO:0016021(PANTHER)
Sed01g1346 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Sed01g1346 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Sed01g1346 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Sed01g1346 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Sed01g1346 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed01g1346 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed01g1346 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed01g1346 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed01g1346 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed01g1346 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed01g1346 182 Gene3D - 23 177 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1346 Sed-Chr1:10048730 Sed13g2038 Sed-Chr13:25242960 1.70E-82 wgd
Sed01g1346 Sed-Chr1:10048730 Sed03g1580 Sed-Chr3:10062575 2.50E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1346 K03661 - csv:101221052 322.783