Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1346 | ATGTCTAGCGCCGTCGTGGTCGCTCATTCTAGCTCCTGGGCTCGCGCTCTCATCCACATCTCGCCGTACACTTTCTCCGCCCTCGGCATCGCCGTCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATTACGGGAAGCAGTTTGATTGGCGCGGCGATTAAAGCTCCTCGTATTACTTCGAAGAATTTGATTAGTGTGATTTTCTGTGAAGCTGTTGCTATATACGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGCCAGCATCTCAGATATATGCCCCCGAAAGTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATTGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGTAGCTGTGCACTATCAGATGCTCAAAACTCCTCTCTCTTCGTGAAGATTCTTGTAATCGAGATCTTTGGCAGTGCTCTTGGGTTGTTTGGAGTGATTGTTGGAATAATTATGTCTGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA | 549 | 48.82 | MSSAVVVAHSSSWARALIHISPYTFSALGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10048730 | 10051158 | + | Sed0016723.1 | Sed01g1346 | 700650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1346 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt1 | 25 | 87 | - | - | |
Sed01g1346 | 182 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 9 | 175 | - | GO:0016021(PANTHER) | |
Sed01g1346 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 104 | 172 | IPR035921 | - | |
Sed01g1346 | 182 | FunFam | V-type proton ATPase proteolipid subunit | 23 | 178 | - | - | |
Sed01g1346 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt2 | 107 | 171 | - | - | |
Sed01g1346 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 21 | 90 | IPR035921 | - | |
Sed01g1346 | 182 | Pfam | ATP synthase subunit C | 112 | 171 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Sed01g1346 | 182 | Pfam | ATP synthase subunit C | 28 | 87 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Sed01g1346 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 67 | 91 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Sed01g1346 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 123 | 149 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Sed01g1346 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 41 | 65 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Sed01g1346 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 150 | 173 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Sed01g1346 | 182 | Gene3D | - | 23 | 177 | IPR035921 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1346 | Sed-Chr1:10048730 | Sed13g2038 | Sed-Chr13:25242960 | 1.70E-82 | wgd | |
Sed01g1346 | Sed-Chr1:10048730 | Sed03g1580 | Sed-Chr3:10062575 | 2.50E-86 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1346 | K03661 | - | csv:101221052 | 322.783 |