Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1349 ATGGGATCTGCATTTGAGGGAATAATCAAAGATTTCAAGGCAAGGGCAGCCTGCTATAAGCAGGATTGGATATGTTCAGGCTTCAGGATTTTAGCTCCCACTTTGTACATCTTCTTTGCCTCTGCTCTTCCTGTTATTGCCTTTGGAGACCAACTTAGTAGAGATACAGATGGAAGATTGAGCACAGTGGAAACATTAACATCAACAGCCCTTTGTGGAATTATCCACTCAATATTTGGTGGACAGCCTTTGCTGATTTTAGGAGTGGCAGAACCAACAGTTATAATGTACACTTACTTGTACAGTTTCTGTAAAGGCCGACCCGAGTTAGGAGGTGAGCTCTTTTTAGCATGGGCTGGATGGGTGTGCATCTGGGCAGGATTCTTCTTGATTCTTCTTGCAATCTTTAATGCTTGCACCATTATCACCAAATTTACAAGAGTTGCTGGGGAATTATTTGGAATGCTTATTGCTGTTCTTTTCTTTCAAGAGGCAATAAAGGGATTGATCAGCGAGTTCGAAATTCCCAAGTCGGAAAATCCAAAGCTATTGAAGTACCAATTCGAATGGTTGTTTGCAAATGGGTTGCTTGCCATCATTTTCTCTTTGGGTCTACTCTTTTCAGCCTTGAAAACCAGACTTGCGAGATCATGGAAATATGGCACTGGCTGGTTTAGGAGTTTCATTGCGGACTACGGGGTTCCACTTATGGTCTTGTTATGGACAGCATTGTCGTATGGAGTTCCCAGCAAAGTTCCAGATGGAGTTCCTAGGAGACTCTTTTGTCCATTACCTTGGGAGCCGGCCTCATTGTACCACTGGACTGTAGTCAAGGACATGGGGAAGGTTCCATTGACCTACATCTTTGCTGCTTCTCTGCCAGCCGTGATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCACAAATGGCACAACAGAAAGAGTTTAATCTTCAAAAGCCATCTGCATATCATTATGATGTCTTCTTGTTGGGGATTATGACTCTGATTTGTGGATTGCTTGGACTACCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGCCTTGCAGTGCTTAAACGGCAGATAATTCGAAGAAAAGTGGTGAAGAGTGCAAAGGAATGTATCAAACTAAGAGCGAGCAACCCTGAAATTTATGGAAAGATGGAGGCTGTGTTCATTGAAATGGATGCTTCTCCAACTCCTACAGAACTAGAAACCTTGGCGAAGGCGGTAATGAATGCCGATGACAGTGAACGGAAGGGAAAATTCGACGCTGAGAAAAATATAGATCCTTATTTGCCTGTATGTGTGAATGAACAGAGAATGAGCAACTTGTTGCAGTCCATCCTTGTGGCCGCATTAGTATTTGCTATTCCTAAAATAAAAATGATACCTTCTTCAGTTCTTTGGGGATACTTTGCTTACATGGCCATTGATAGTCTCCCAGGAAATCAGTTTTGGGAAAGGATGTTGTTGCTCTTCATTACGCCTGGTCGTCGTTTCAAGGTCTTGGAGGGGTCCCATCTATCTTTTGTTGAAAGAGTGCCATTCAAGATCATTGCGTCATTTACGCTCTTTCAATTTGCATATTTCTTGTTGTGCTTTGGGGTAACATGGATACCTATAGCTGGGATCATGTTCCCACTGCCATTTTTCCTCCTCATTAGCTTAAGAGAGCATATGTTCCCTAAGTTCTTCCATCATAACTATCTTCAAGAGCTAGATGCTTCAGAGTACGAGGAGATCGCTGGTGCTCGACATCGGAATCTCGCAGTTCTGGAAAAGGAGCCACCGGATTCAATCGCGGCCGAGAGTAACGAAGAATACTATGATGCCGAGATATTAGATGAAATGACAACTCATAGAGGAGAATTCAAGCTTAGAACTTTAAGTTTTGAAGAAGAACAAGAAAGGTTATCTCAGGTTCATCCCGAAGATTCTCTTCAAATACAATGA 1977 42.79 MGSAFEGIIKDFKARAACYKQDWICSGFRILAPTLYIFFASALPVIAFGDQLSRDTDGRLSTVETLTSTALCGIIHSIFGGQPLLILGVAEPTVIMYTYLYSFCKGRPELGGELFLAWAGWVCIWAGFFLILLAIFNACTIITKFTRVAGELFGMLIAVLFFQEAIKGLISEFEIPKSENPKLLKYQFEWLFANGLLAIIFSLGLLFSALKTRLARSWKYGTGWFRSFIADYGVPLMVLLWTALSYGVPSKVPDGVPRRLFCPLPWEPASLYHWTVVKDMGKVPLTYIFAASLPAVMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQIIRRKVVKSAKECIKLRASNPEIYGKMEAVFIEMDASPTPTELETLAKAVMNADDSERKGKFDAEKNIDPYLPVCVNEQRMSNLLQSILVAALVFAIPKIKMIPSSVLWGYFAYMAIDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSFVERVPFKIIASFTLFQFAYFLLCFGVTWIPIAGIMFPLPFFLLISLREHMFPKFFHHNYLQELDASEYEEIAGARHRNLAVLEKEPPDSIAAESNEEYYDAEILDEMTTHRGEFKLRTLSFEEEQERLSQVHPEDSLQIQ 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10065235 10069904 + Sed0007663.1 Sed01g1349 700653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1349 658 PANTHER ANION EXCHANGE PROTEIN 4 629 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Sed01g1349 658 Pfam HCO3- transporter integral membrane domain 4 176 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1349 658 Pfam HCO3- transporter integral membrane domain 195 368 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1349 658 Pfam HCO3- transporter integral membrane domain 443 584 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1349 Sed-Chr1:10065235 Sed01g1352 Sed-Chr1:10065235 0.00E+00 dispersed
Sed01g1348 Sed-Chr1:10064014 Sed01g1349 Sed-Chr1:10065235 0.00E+00 tandem
Sed01g1349 Sed-Chr1:10065235 Sed01g1350 Sed-Chr1:10065235 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1349 K24194 - csv:101220188 1157.13