Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1351 ATGGATTTATTTTCTTTGTTTGTCTGTTGTAGGGTGTGCATCTGGGCAGGATTCTTCTTGATTCTTCTTGCAATCTTTAATGCTTGCACCATTATCACCAAATTTACAAGAGTTGCTGGGGAATTATTTGGAATGCTTATTGCTGTTCTTTTCTTTCAAGAGGCAATAAAGGGATTGATCAGCGAGTTCGAAATTCCCAAGTCGGAAAATCCAAAGCTATTGAAGTACCAATTCGAATGGTTGTTTGCAAATGGGTTGCTTGCCATCATTTTCTCTTTGGGTCTACTCTTTTCAGCCTTGAAAACCAGACTTGCGAGATCATGGAAATATGGCACTGGCTGGTTTAGGAGTTTCATTGCGGACTACGGGGTTCCACTTATGGTCTTGTTATGGACAGCATTGTCGTATGGAGTTCCCAGCAAAGTTCCAGATGGAGTTCCTAGGAGACTCTTTTGTCCATTACCTTGGGAGCCGGCCTCATTGTACCACTGGACTGTAGTCAAGGACATGGGGAAGGTTCCATTGACCTACATCTTTGCTGCTTCTCTGCCAGCCGTGATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCACAAATGGCACAACAGAAAGAGTTTAATCTTCAAAAGCCATCTGCATATCATTATGATGTCTTCTTGTTGGGGATTATGACTCTGATTTGTGGATTGCTTGGACTACCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGCCTTGCAGTGCTTAAACGGCAGATAATTCGAAGAAAAGTGGTGAAGAGTGCAAAGGAATGTATCAAACTAAGAGCGAGCAACCCTGAAATTTATGGAAAGATGGAGGCTGTGTTCATTGAAATGGATGCTTCTCCAACTCCTACAGAACTAGAAACCTTGGCGAAGGCGGTAATGAATGCCGATGACAGTGAACGGAAGGGAAAATTCGACGCTGAGAAAAATATAGATCCTTATTTGCCTGTATGTGTGAATGAACAGAGAATGAGCAACTTGTTGCAGTCCATCCTTGTGGCCGCATTAGTATTTGCTATTCCTAAAATAAAAATGATACCTTCTTCAGTTCTTTGGGGATACTTTGCTTACATGGCCATTGATAGTCTCCCAGGAAATCAGTTTTGGGAAAGGATGTTGTTGCTCTTCATTACGCCTGGTCGTCGTTTCAAGGTCTTGGAGGGGTCCCATCTATCTTTTGTTGAAAGAGTGCCATTCAAGATCATTGCGTCATTTACGCTCTTTCAATTTGCATATTTCTTGTTGTGCTTTGGGGTAACATGGATACCTATAGCTGGGATCATGTTCCCACTGCCATTTTTCCTCCTCATTAGCTTAAGAGAGCATATGTTCCCTAAGTTCTTCCATCATAACTATCTTCAAGAGCTAGATGCTTCAGAGTACGAGGAGATCGCTGGTGCTCGACATCGGAATCTCGCAGTTCTGGAAAAGGAGCCACCGGATTCAATCGCGGCCGAGAGTAACGAAGAATACTATGATGCCGAGATATTAGATGAAATGACAACTCATAGAGGAGAATTCAAGCTTAGAACTTTAAGTTTTGAAGAAGAACAAGAAAGGTTATCTCAGGTTAGAAACAAGAATCCACTGCCTCTATCCATTTTACCACTTGTTTCATCCTTTTGCTTAGCAAACACATCATCTGACATTTGGATTTCAGGTTCATCCCGAAGATTCTCTTCAAATACAATGAAGCAGTTTGATACAAATAGGATAAGAGGGTGTTTATTGAGCTCGACGCAATGGCGATTACGACAATCAAAATATAGGAGTTAA 1821 41.95 MDLFSLFVCCRVCIWAGFFLILLAIFNACTIITKFTRVAGELFGMLIAVLFFQEAIKGLISEFEIPKSENPKLLKYQFEWLFANGLLAIIFSLGLLFSALKTRLARSWKYGTGWFRSFIADYGVPLMVLLWTALSYGVPSKVPDGVPRRLFCPLPWEPASLYHWTVVKDMGKVPLTYIFAASLPAVMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQIIRRKVVKSAKECIKLRASNPEIYGKMEAVFIEMDASPTPTELETLAKAVMNADDSERKGKFDAEKNIDPYLPVCVNEQRMSNLLQSILVAALVFAIPKIKMIPSSVLWGYFAYMAIDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSFVERVPFKIIASFTLFQFAYFLLCFGVTWIPIAGIMFPLPFFLLISLREHMFPKFFHHNYLQELDASEYEEIAGARHRNLAVLEKEPPDSIAAESNEEYYDAEILDEMTTHRGEFKLRTLSFEEEQERLSQVRNKNPLPLSILPLVSSFCLANTSSDIWISGSSRRFSSNTMKQFDTNRIRGCLLSSTQWRLRQSKYRS 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10065235 10069904 + Sed0007663.3 Sed01g1351 700655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1351 606 PANTHER ANION EXCHANGE PROTEIN 9 519 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Sed01g1351 606 Pfam HCO3- transporter integral membrane domain 333 474 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1351 606 Pfam HCO3- transporter integral membrane domain 86 258 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1351 606 Pfam HCO3- transporter integral membrane domain 10 67 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1351 Sed-Chr1:10065235 Sed03g1589 Sed-Chr3:10096033 4.50E-241 dispersed
Sed01g1350 Sed-Chr1:10065235 Sed01g1351 Sed-Chr1:10065235 4.9e-311 tandem
Sed01g1351 Sed-Chr1:10065235 Sed01g1352 Sed-Chr1:10065235 5.80E-305 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1351 K24194 - csv:101220188 927.932