Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1352 ATGTACACTTACTTGTACAGTTTCTGTAAAGGCCGACCCGAGTTAGGAGGTGAGCTCTTTTTAGCATGGGCTGGATGGGTGTGCATCTGGGCAGGATTCTTCTTGATTCTTCTTGCAATCTTTAATGCTTGCACCATTATCACCAAATTTACAAGAGTTGCTGGGGAATTATTTGGAATGCTTATTGCTGTTCTTTTCTTTCAAGAGGCAATAAAGGGATTGATCAGCGAGTTCGAAATTCCCAAGTCGGAAAATCCAAAGCTATTGAAGTACCAATTCGAATGGTTGTTTGCAAATGGGTTGCTTGCCATCATTTTCTCTTTGGGTCTACTCTTTTCAGCCTTGAAAACCAGACTTGCGAGATCATGGAAATATGGCACTGGCTGGTTTAGGAGTTTCATTGCGGACTACGGGGTTCCACTTATGGTCTTGTTATGGACAGCATTGTCGTATGGAGTTCCCAGCAAAGTTCCAGATGGAGTTCCTAGGAGACTCTTTTGTCCATTACCTTGGGAGCCGGCCTCATTGTACCACTGGACTGTAGTCAAGGACATGGGGAAGGTTCCATTGACCTACATCTTTGCTGCTTCTCTGCCAGCCGTGATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCACAAATGGCACAACAGAAAGAGTTTAATCTTCAAAAGCCATCTGCATATCATTATGATGTCTTCTTGTTGGGGATTATGACTCTGATTTGTGGATTGCTTGGACTACCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGCCTTGCAGTGCTTAAACGGCAGATAATTCGAAGAAAAGTGGTGAAGAGTGCAAAGGAATGTATCAAACTAAGAGCGAGCAACCCTGAAATTTATGGAAAGATGGAGGCTGTGTTCATTGAAATGGATGCTTCTCCAACTCCTACAGAACTAGAAACCTTGGCGAAGGCGGTAATGAATGCCGATGACAGTGAACGGAAGGGAAAATTCGACGCTGAGAAAAATATAGATCCTTATTTGCCTGTATGTGTGAATGAACAGAGAATGAGCAACTTGTTGCAGTCCATCCTTGTGGCCGCATTAGTATTTGCTATTCCTAAAATAAAAATGATACCTTCTTCAGTTCTTTGGGGATACTTTGCTTACATGGCCATTGATAGTCTCCCAGGAAATCAGTTTTGGGAAAGGATGTTGTTGCTCTTCATTACGCCTGGTCGTCGTTTCAAGGTCTTGGAGGGGTCCCATCTATCTTTTGTTGAAAGAGTGCCATTCAAGATCATTGCGTCATTTACGCTCTTTCAATTTGCATATTTCTTGTTGTGCTTTGGGGTAACATGGATACCTATAGCTGGGATCATGTTCCCACTGCCATTTTTCCTCCTCATTAGCTTAAGAGAGCATATGTTCCCTAAGTTCTTCCATCATAACTATCTTCAAGAGCTAGATGCTTCAGAGTACGAGGAGATCGCTGGTGCTCGACATCGGAATCTCGCAGTTCTGGAAAAGGAGCCACCGGATTCAATCGCGGCCGAGAGTAACGAAGAATACTATGATGCCGAGATATTAGATGAAATGACAACTCATAGAGGAGAATTCAAGCTTAGAACTTTAAGTTTTGAAGAAGAACAAGAAAGGTTATCTCAGGTTCATCCCGAAGATTCTCTTCAAATACAATGA 1692 42.91 MYTYLYSFCKGRPELGGELFLAWAGWVCIWAGFFLILLAIFNACTIITKFTRVAGELFGMLIAVLFFQEAIKGLISEFEIPKSENPKLLKYQFEWLFANGLLAIIFSLGLLFSALKTRLARSWKYGTGWFRSFIADYGVPLMVLLWTALSYGVPSKVPDGVPRRLFCPLPWEPASLYHWTVVKDMGKVPLTYIFAASLPAVMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQIIRRKVVKSAKECIKLRASNPEIYGKMEAVFIEMDASPTPTELETLAKAVMNADDSERKGKFDAEKNIDPYLPVCVNEQRMSNLLQSILVAALVFAIPKIKMIPSSVLWGYFAYMAIDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSFVERVPFKIIASFTLFQFAYFLLCFGVTWIPIAGIMFPLPFFLLISLREHMFPKFFHHNYLQELDASEYEEIAGARHRNLAVLEKEPPDSIAAESNEEYYDAEILDEMTTHRGEFKLRTLSFEEEQERLSQVHPEDSLQIQ 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10065235 10069904 + Sed0007663.4 Sed01g1352 700656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1352 563 Pfam HCO3- transporter integral membrane domain 5 82 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1352 563 Pfam HCO3- transporter integral membrane domain 348 489 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1352 563 Pfam HCO3- transporter integral membrane domain 100 273 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1352 563 PANTHER ANION EXCHANGE PROTEIN 1 534 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1348 Sed-Chr1:10064014 Sed01g1352 Sed-Chr1:10065235 0.00E+00 dispersed
Sed01g1349 Sed-Chr1:10065235 Sed01g1352 Sed-Chr1:10065235 0.00E+00 dispersed
Sed01g1350 Sed-Chr1:10065235 Sed01g1352 Sed-Chr1:10065235 0.00E+00 dispersed
Sed01g1352 Sed-Chr1:10065235 Sed03g1589 Sed-Chr3:10096033 2.10E-256 dispersed
Sed01g1351 Sed-Chr1:10065235 Sed01g1352 Sed-Chr1:10065235 5.80E-305 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1352 K24194 - csv:101220188 991.875