Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1370 ATGGGGGAAACAAGGGATAACGAATACGAGGAGGAGCTTCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCCGACTCTGTTGGAGCCAAAGTCAATGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTTCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTGGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCCAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCATCACTGCAGCAGATTGACCCTGTTGCCGATCAAGTTTCTGCTCTAGTTCTGTGCCATACTAGGGAGCTCGCATACCAGATATGTCACGAGTTTGAAAGGTTCAGCAGTTATCTTACCGATCTGAAGGTTGCTGTCTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTTTGAAAAATGAATGCCCTCATATTGTTGTTGGCACACCCGGAAGGATATTGGCATTGTCAAGAGATAAGGACCTATCTCTGAAGAATGTGCGACATTTTATCTTGGATGAATGTGACAAGATGCTGGAGTCACTTGATATGCGGAGGGACGTACAAGAAATATTCAAGATGACTCCCCATGAAAAACAAGTTATGATGTTTTCTGCCACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGACGAAGCAAAGTTGACATTACATGGTCTTGTTCAGCACTACATCAAATTGAGTGAGGGGGAGAAAAATCGGAAGTTGAATGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTCAAAAGTGTTAGTAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTTCCCTCTATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTTGTGGCAACTGATTTGGTTGGTCGAGGAATTGACATCGAACGTGTAAACATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCATAGGGTTGGCAGAGCTGGTAGATTTGGGACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATGTTCAAGAAAGGTTTGAAGTAGATATTAAGGAGCTTCCAGAGCAGATTGATATGTCTACATACATGCCATCATAG 1284 42.52 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVADQVSALVLCHTRELAYQICHEFERFSSYLTDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHEKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEGEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDMSTYMPS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10192706 10198263 - Sed0020387.1 Sed01g1370 700674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1370 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Sed01g1370 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Sed01g1370 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Sed01g1370 427 SMART helicmild6 302 383 IPR001650 -
Sed01g1370 427 Gene3D - 259 426 IPR027417 -
Sed01g1370 427 Pfam Helicase conserved C-terminal domain 275 383 IPR001650 -
Sed01g1370 427 MobiDBLite consensus disorder prediction 1 29 - -
Sed01g1370 427 CDD DEADc_DDX39 45 252 - -
Sed01g1370 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 410 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Sed01g1370 427 SMART ultradead3 65 266 IPR014001 -
Sed01g1370 427 CDD SF2_C_DEAD 263 392 - -
Sed01g1370 427 MobiDBLite consensus disorder prediction 1 22 - -
Sed01g1370 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724(InterPro)
Sed01g1370 427 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Sed01g1370 427 Gene3D - 42 258 IPR027417 -
Sed01g1370 427 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Sed01g1370 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1370 Sed-Chr1:10192706 Sed12g0176 Sed-Chr12:1004536 1.20E-67 dispersed
Sed01g1370 Sed-Chr1:10192706 Sed03g1607 Sed-Chr3:10222500 1.20E-240 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1370 K12812 - csv:101217346 819.69