Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1374 ATGCCGCGATTGCTTCATGGGACGCTCAATGCCAATATATATGGAATCGATAAGCTTCAAACGGGATTTCCTATTTTCTGCGGGAAGGATAAGAGGTCGACAAAAAAGTTTCTTGCTGGAGTGAAGAGATGCATTCTTTGCCGGCCAGAGATTGTTGGATCACGAATGTATGCAACTGTCGATCTTGATAAGGCACGAGTTGGCCGGACGAGAATAGTGGATCAACCATACAGTCCTCAGTGGAACGAGTATTTTCGTATATATAGTGCCCATACAGTTTCACATATTATATTCACAGTTAAAGATGGAGGTGTAATTGGTGCAACATTAATTGGAAGGGCTTATGTGCCTGTTGAAGATATCATTAAGGGATATGTATATGAAAAATGGGTTGATATTTTAGATGAAGACGGCAAGCCTATTTATGGTCGTTCTCGAATCCATGTAAAGTTGCAATTTTCAAGTGCTAATGAAGACAGGAACTGGTCCCGAGGAATCCTAGATCCGCAGTTCGGTGGTGTACCTTTCTCATTCTTCAAACAAAGATGGGGTTGCAAAATTTCTCTTTACCAGGATGCTCATGTTTTAAACAACTTTCTTCCTCGAGTTGGTTTGTCAGGAGGGAATTATCATGATGTACACAGGTGTTGGGAGGATATTTTTTATGCAATTAGCAATGCCAAGCACTTGATTTACATAACTGGCTGGTCTGTGTATACAGAAATAACCTTGATAAGAGACCAAGAAAGAAGTAAGACAGGAGAGGATATTACTCTTGGGCAACTGCTAAAGAAGAAGGCAGAGGAAGGTGTGACCGTTTTGCTTCTTGTTTGGGATGACAGAACTTCCATTGAAGAGTTCAAAAGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAATACTTCAGGGGCTCGAAGGTACGTTGTGTTCTATGTCCACGGAATCCTGATGATGGTAGAAGCATAATTCAGGGGTTTGAGACTGCTTCCATGTTTACTCACCACCAGAAAACAGTTGTGCTTGATTGTGAAATAGCTGGTGGAAAAACAGAGAAAAGAAGGATTGTGAGTTTTGTTGGTGGCATTGATCTGTGTGATGGGAGATATGATACACCGAAACACCTTTTGTTTTCAACTCTAGATTCAATCCATTATAGAGATTTTCACCAGCCCAACTTTTCAGGCTCTTCAATTAGGAAAGGCGGTCCAAGGGAACCATGGCATGACATCCATTGCCGCCTAGAAGGGCCTGTTGCTTGGGATATTTTGTACAATTTTGAGCAAAGATGGCGAAAACAAGTGGGAGCCAGCATGTTGATTCCCATGTCAAAGCTTGAAGAAACCATTGTCCGCCCATCGGTAGTTTTACCATCAGACGACCCTGAAACATGGAATGTTCAAATATTTCGTTCTATTGACGGTGGTGCTGTAGAGGGCTTTCCAGCTATACCTGAAGAGGCAGCTAAAGTAGGCCTCGTAAGTGGGAAGAACAATGTTCTAGATAAGAGTATTCAAAATGCTTATATTAATGCCATTCGCCGAGCAAAAAATTTCATATACATTGAGAATCAATATTTCCTTGGAAGCTCTTATGGTTGGAAATCAGACGGTATACGAGTAGAAGAAATCAATGCTTTGCATCTCATCCCGAAGGAGATCTCACTGAAGATTGTGAGCAAGATTGAAGCTGGAGAGAGGTTTACAGCATATATTGTGATTCCAATGTGGCCAGAAGGTATTCCTGAGAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGAACCTTGGATATGATGTACACAGATATAACTCAGGCCCTTCGAAAGAAGGGTCTCGATGCAAATCCTAGAGATTACCTAACATTCTTCTGCCTTGGTAATCGAGAGAAAAAAAGGACTGGAGAATATTTACCACCAGAGAAACCAGAACCCAACTCGGATTATGCTCGCGCTCAAGAGTTTCGGCGTTTTATGATCTATGTTCATTCAAAAATGATGATAGTGGATGATGAATACATAATTATCGGGTCTGCCAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATTGCAATGGGGGCTTTCCAACCTCACCACTTGGCATCTGGTGAGCCTGCAAGAGGCCAAATCTATGGCTTCCGAGTGGCTCTCTGGTACGAGCATCTTGGTCTGTTTGACAAACTCTTCCCAAGCCCAGAGAATGAAAATTGCGTCCGGTTCGTAAATAAGCTCGCTCAAGAGAACTGGCAATTTTACACGGACGATACCTTTGATGGCGATCTTCCTGGTCATCTGCTTTCCTATCCCATTGCAGTAGGCCCCAATGGATCAGTCTCAGCACTGCCAAACTTTGAATTTTTCCCCGACACGAAAGCTCGTGTTCTTGGTCGACTGGCCGAGTACCTACCTCCAATTCTTACCACTTGA 2445 42.74 MPRLLHGTLNANIYGIDKLQTGFPIFCGKDKRSTKKFLAGVKRCILCRPEIVGSRMYATVDLDKARVGRTRIVDQPYSPQWNEYFRIYSAHTVSHIIFTVKDGGVIGATLIGRAYVPVEDIIKGYVYEKWVDILDEDGKPIYGRSRIHVKLQFSSANEDRNWSRGILDPQFGGVPFSFFKQRWGCKISLYQDAHVLNNFLPRVGLSGGNYHDVHRCWEDIFYAISNAKHLIYITGWSVYTEITLIRDQERSKTGEDITLGQLLKKKAEEGVTVLLLVWDDRTSIEEFKRDGLMATHDQETAEYFRGSKVRCVLCPRNPDDGRSIIQGFETASMFTHHQKTVVLDCEIAGGKTEKRRIVSFVGGIDLCDGRYDTPKHLLFSTLDSIHYRDFHQPNFSGSSIRKGGPREPWHDIHCRLEGPVAWDILYNFEQRWRKQVGASMLIPMSKLEETIVRPSVVLPSDDPETWNVQIFRSIDGGAVEGFPAIPEEAAKVGLVSGKNNVLDKSIQNAYINAIRRAKNFIYIENQYFLGSSYGWKSDGIRVEEINALHLIPKEISLKIVSKIEAGERFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDITQALRKKGLDANPRDYLTFFCLGNREKKRTGEYLPPEKPEPNSDYARAQEFRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASGEPARGQIYGFRVALWYEHLGLFDKLFPSPENENCVRFVNKLAQENWQFYTDDTFDGDLPGHLLSYPIAVGPNGSVSALPNFEFFPDTKARVLGRLAEYLPPILTT 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10215310 10221601 + Sed0023011.1 Sed01g1374 700678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1374 814 SMART pld_4 660 687 IPR001736 GO:0003824(InterPro)
Sed01g1374 814 SMART pld_4 332 370 IPR001736 GO:0003824(InterPro)
Sed01g1374 814 Gene3D C2 domain 46 166 IPR035892 -
Sed01g1374 814 Gene3D Endonuclease Chain A 477 704 - -
Sed01g1374 814 PANTHER PHOSPHOLIPASE D 43 801 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed01g1374 814 FunFam Phospholipase D 473 706 - -
Sed01g1374 814 Gene3D Endonuclease Chain A 206 452 - -
Sed01g1374 814 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 332 370 IPR001736 GO:0003824(InterPro)
Sed01g1374 814 FunFam Phospholipase D delta 207 451 - -
Sed01g1374 814 Pfam C2 domain 54 132 IPR000008 -
Sed01g1374 814 SMART C2_3c 8 130 IPR000008 -
Sed01g1374 814 Pfam Phospholipase D Active site motif 662 687 IPR001736 GO:0003824(InterPro)
Sed01g1374 814 SUPERFAMILY Phospholipase D/nuclease 158 444 - -
Sed01g1374 814 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 154 IPR035892 -
Sed01g1374 814 PIRSF PLD_plant 1 814 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed01g1374 814 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 660 687 IPR001736 GO:0003824(InterPro)
Sed01g1374 814 SUPERFAMILY Phospholipase D/nuclease 494 738 - -
Sed01g1374 814 ProSiteProfiles C2 domain profile. 1 131 IPR000008 -
Sed01g1374 814 CDD C2_plant_PLD 1 153 - -
Sed01g1374 814 Pfam Phospholipase D C terminal 732 803 IPR024632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1374 Sed-Chr1:10215310 Sed05g1449 Sed-Chr5:28237338 0.00E+00 dispersed
Sed01g1374 Sed-Chr1:10215310 Sed09g1494 Sed-Chr9:38679941 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1374 K01115 - csv:101207900 1524.99