Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1380 ATGTTTGCCGCAGAGAATGGTCTAAACGGAGACCCAAGGCTTGAAGCCATATCTCAAGCCATTAGAGTGGTTCCTCACTTCCCCAAGCCTGGGATCATGTTTCAAGATATCACCACGTTGTTGCTGGATCATAAGGCCTTTAAGGATACTCTCGACATTTTTGTTGATCGTTACAGACCCATGAACATCTCTGCTGTTGCTGGGGTGGAAGCCAGGGGATTTATGTTTGGCCCTTCAATTGCCTTAGCCATTGGAGCAAAGTTCGTTCCTTTACGAAAACCCACAAAACTTCCTGGCAAAGTGATTTCAGAAGCTTATGATTTGGAGTATGGAAAAGACTGTTTAGAAATGGAAATGGAAGCTGTAAAAACAGGGGAACGTGCAATTGTTGTTGATGATTTGGTCGCCACCGGTGGAACCTTGTCGGCAGCAATCAGGCTTCTGGAACGGATGGGTGCTGAAGTTGTTGAATGTGCTTGTGTTGTTGGATTGCGCGAAGTTAAGGGACAGCGCAGGCTTAATGGAAAGCCACTTTATATCCTTGTTGAGCCACGTCAATTGGATGGTTGTTTTTAA 576 45.31 MFAAENGLNGDPRLEAISQAIRVVPHFPKPGIMFQDITTLLLDHKAFKDTLDIFVDRYRPMNISAVAGVEARGFMFGPSIALAIGAKFVPLRKPTKLPGKVISEAYDLEYGKDCLEMEMEAVKTGERAIVVDDLVATGGTLSAAIRLLERMGAEVVECACVVGLREVKGQRRLNGKPLYILVEPRQLDGCF 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10247798 10251126 + Sed0003302.2 Sed01g1380 700684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1380 191 CDD PRTases_typeI 62 183 IPR000836 -
Sed01g1380 191 FunFam Adenine phosphoribosyltransferase 1 5 184 - -
Sed01g1380 191 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 9 184 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Sed01g1380 191 NCBIfam adenine phosphoribosyltransferase 18 182 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Sed01g1380 191 Hamap Adenine phosphoribosyltransferase [apt]. 17 184 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Sed01g1380 191 SUPERFAMILY PRTase-like 20 176 IPR029057 -
Sed01g1380 191 Gene3D - 6 184 IPR029057 -
Sed01g1380 191 Pfam Phosphoribosyl transferase domain 61 163 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1380 K00759 - - csv:101215432 352.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1380 Sed-Chr1:10247798 Sed03g1619 Sed-Chr3:10309004 3.30E-97 dispersed
Sed01g1379 Sed-Chr1:10247798 Sed01g1380 Sed-Chr1:10247798 3.00E-106 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g497 . . . . Bpe02g01252 . . . Cmo05g00378 Cmo12g00294 . Cma05g00376 . Car12g00327 Sed01g1380 . . Bhi04g00941 Tan02g2731 Cmetu03g1736 . Hepe10g0243 . Lcy13g1798 . . . . . . . . . Cone17ag1015 Cone20ag0355 . . . Cme03g01606 . Blo18g00019 Bda01g01004 Bda13g01256 Bpe14g00584 . Bma01g01273 . . . . . Cma12g00344 . Car05g00320 . . . . . . . . . Cla08g01342 Cam08g1804 Cec08g1383 Cco08g1511 Clacu08g1498 . Cre08g1285 Lsi08g01213 . Chy03g01111 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g1379 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed01g1380 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed03g1619 . 33 189 PRT Gene Family AT1G80050 78.3 9.6e-66 247.3
Sed05g0981 . 30 180 PRT Gene Family AT1G80050 76.2 2.9e-62 235.7
Sed01g4012 . 30 180 PRT Gene Family AT1G80050 76.8 1.4e-61 233.4
Sed04g0771 . 27 177 PRT Gene Family AT1G80050 74.8 2.5e-61 232.6
Sed10g1206 . 98 247 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed10g1207 . 54 203 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed01g4014 . 13 130 PRT Gene Family AT1G80050 77.1 7.7e-47 184.5
Sed01g4013 . 28 143 PRT Gene Family AT1G80050 77.6 2.9e-46 182.6
Sed03g1619 . 1 148 PRT Gene Family AT5G11160 81.1 3.2e-64 242.3
Sed01g1379 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g1380 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g4012 . 8 145 PRT Gene Family AT5G11160 76.1 6.1e-55 211.5
Sed05g0981 . 8 145 PRT Gene Family AT5G11160 74.6 1.0e-54 210.7
Sed10g1206 . 76 213 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed10g1207 . 32 169 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed04g0771 . 5 142 PRT Gene Family AT5G11160 71.7 4.8e-52 201.8
Sed10g1206 . 69 249 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed10g1207 . 25 205 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed05g0981 . 1 180 PRT Gene Family AT1G27450 71.7 7.9e-72 267.7
Sed01g4012 . 7 180 PRT Gene Family AT1G27450 74.7 6.7e-71 264.6
Sed04g0771 . 4 177 PRT Gene Family AT1G27450 71.8 1.3e-69 260.4
Sed03g1619 . 11 183 PRT Gene Family AT1G27450 68.8 3.8e-66 248.8
Sed01g1379 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g1380 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g4013 . 7 143 PRT Gene Family AT1G27450 57.5 2.7e-48 189.5
Sed01g4014 . 13 130 PRT Gene Family AT1G27450 75.4 1.1e-46 184.1
Sed01g0252 . 63 549 PRT Gene Family AT2G16570 84.0 3.2e-241 832.0
Sed05g3558 . 68 554 PRT Gene Family AT2G16570 82.6 1.4e-236 816.6
Sed09g0518 . 66 523 PRT Gene Family AT2G16570 76.9 2.2e-205 713.0
Sed01g0252 . 55 549 PRT Gene Family AT4G34740 83.7 7.6e-243 837.4
Sed05g3558 . 24 554 PRT Gene Family AT4G34740 78.4 4.0e-236 815.1
Sed09g0518 . 55 523 PRT Gene Family AT4G34740 76.8 1.8e-207 719.9
Sed05g3558 . 1 527 PRT Gene Family AT4G38880 67.9 7.1e-198 688.0
Sed01g0252 . 6 522 PRT Gene Family AT4G38880 67.4 3.9e-196 682.2
Sed09g0518 . 70 520 PRT Gene Family AT4G38880 70.2 1.1e-177 620.9
Sed10g1206 . 69 249 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed10g1207 . 25 205 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed05g0981 . 1 180 PRT Gene Family AT1G27450 71.7 7.9e-72 267.7
Sed01g4012 . 7 180 PRT Gene Family AT1G27450 74.7 6.7e-71 264.6
Sed04g0771 . 4 177 PRT Gene Family AT1G27450 71.8 1.3e-69 260.4
Sed03g1619 . 11 183 PRT Gene Family AT1G27450 68.8 3.8e-66 248.8
Sed01g1379 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g1380 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g4013 . 7 143 PRT Gene Family AT1G27450 57.5 2.7e-48 189.5
Sed01g4014 . 13 130 PRT Gene Family AT1G27450 75.4 1.1e-46 184.1
Sed01g1379 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed01g1380 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed03g1619 . 33 189 PRT Gene Family AT1G80050 78.3 9.6e-66 247.3
Sed05g0981 . 30 180 PRT Gene Family AT1G80050 76.2 2.9e-62 235.7
Sed01g4012 . 30 180 PRT Gene Family AT1G80050 76.8 1.4e-61 233.4
Sed04g0771 . 27 177 PRT Gene Family AT1G80050 74.8 2.5e-61 232.6
Sed10g1206 . 98 247 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed10g1207 . 54 203 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed01g4014 . 13 130 PRT Gene Family AT1G80050 77.1 7.7e-47 184.5
Sed01g4013 . 28 143 PRT Gene Family AT1G80050 77.6 2.9e-46 182.6
Sed05g0981 . 6 97 PRT Gene Family AT4G22570 84.8 2.0e-43 172.6
Sed01g4012 . 6 97 PRT Gene Family AT4G22570 85.9 4.4e-43 171.4
Sed04g0771 . 1 94 PRT Gene Family AT4G22570 82.7 8.4e-42 167.2
Sed10g1206 . 73 164 PRT Gene Family AT4G22570 82.6 1.3e-39 159.8
Sed10g1207 . 29 120 PRT Gene Family AT4G22570 82.6 1.3e-39 159.8
Sed03g1619 . 11 100 PRT Gene Family AT4G22570 78.9 3.6e-37 151.8
Sed05g0981 . 1 96 PRT Gene Family AT4G12440 80.2 5.5e-40 161.0
Sed01g4012 . 1 96 PRT Gene Family AT4G12440 82.3 5.5e-40 161.0
Sed04g0771 . 5 93 PRT Gene Family AT4G12440 84.3 3.0e-38 155.2
Sed10g1206 . 69 164 PRT Gene Family AT4G12440 79.2 1.9e-37 152.5
Sed10g1207 . 25 120 PRT Gene Family AT4G12440 79.2 1.9e-37 152.5
Sed03g1619 . 4 99 PRT Gene Family AT4G12440 78.1 5.7e-37 151.0
Sed03g1619 . 1 148 PRT Gene Family AT5G11160 81.1 3.2e-64 242.3
Sed01g1379 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g1380 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g4012 . 8 145 PRT Gene Family AT5G11160 76.1 6.1e-55 211.5
Sed05g0981 . 8 145 PRT Gene Family AT5G11160 74.6 1.0e-54 210.7
Sed10g1206 . 76 213 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed10g1207 . 32 169 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed04g0771 . 5 142 PRT Gene Family AT5G11160 71.7 4.8e-52 201.8
Sed11g1384 . 1 186 PRT Gene Family AT1G71750 65.5 1.4e-69 260.4
Sed11g1385 . 1 157 PRT Gene Family AT1G71750 65.2 2.5e-55 213.0
Sed07g2767 . 15 468 PRT Gene Family AT1G55810 84.6 2.9e-224 775.4
Sed04g3616 . 16 469 PRT Gene Family AT1G55810 84.2 1.2e-222 770.0
Sed08g1480 . 19 472 PRT Gene Family AT1G55810 76.3 1.8e-202 703.0
Sed05g2667 . 4 459 PRT Gene Family AT1G55810 75.1 6.8e-202 701.0
Sed06g0448 . 19 480 PRT Gene Family AT1G55810 74.7 1.5e-201 699.9
Sed05g2668 . 4 411 PRT Gene Family AT1G55810 74.8 7.6e-177 617.8
Sed07g2767 . 65 467 PRT Gene Family AT3G27440 77.2 2.4e-185 646.0
Sed04g3616 . 66 468 PRT Gene Family AT3G27440 76.7 1.3e-183 640.2
Sed08g1480 . 70 472 PRT Gene Family AT3G27440 75.2 5.2e-180 628.2
Sed06g0448 . 78 480 PRT Gene Family AT3G27440 74.2 9.9e-179 624.0
Sed05g2667 . 57 459 PRT Gene Family AT3G27440 73.9 1.1e-177 620.5
Sed05g2668 . 57 411 PRT Gene Family AT3G27440 74.1 1.7e-154 543.5
Sed06g0448 . 1 480 PRT Gene Family AT3G27190 86.7 1.4e-248 856.3
Sed08g1480 . 1 472 PRT Gene Family AT3G27190 85.1 1.1e-245 846.7
Sed05g2667 . 1 459 PRT Gene Family AT3G27190 82.8 1.6e-228 789.6
Sed07g2767 . 11 467 PRT Gene Family AT3G27190 76.2 4.7e-209 724.9
Sed04g3616 . 3 468 PRT Gene Family AT3G27190 73.9 1.2e-207 720.3
Sed05g2668 . 1 411 PRT Gene Family AT3G27190 82.3 8.1e-201 697.6
Sed14g0512 . 1 288 PRT Gene Family AT3G53900 68.0 2.2e-108 389.8
Sed14g0514 . 1 238 PRT Gene Family AT3G53900 64.3 3.0e-81 299.7
Sed14g0515 . 1 238 PRT Gene Family AT3G53900 64.3 3.0e-81 299.7
Sed14g0513 . 45 228 PRT Gene Family AT3G53900 72.3 5.3e-78 288.9
Sed07g2767 . 1 468 PRT Gene Family AT4G26510 83.6 3.0e-232 802.0
Sed04g3616 . 1 469 PRT Gene Family AT4G26510 83.7 1.9e-231 799.3
Sed08g1480 . 7 472 PRT Gene Family AT4G26510 77.3 3.3e-215 745.3
Sed06g0448 . 7 480 PRT Gene Family AT4G26510 75.9 1.2e-212 736.9
Sed05g2667 . 1 459 PRT Gene Family AT4G26510 75.7 3.5e-209 725.3
Sed05g2668 . 1 411 PRT Gene Family AT4G26510 74.8 2.8e-182 636.0
Sed06g0448 . 1 480 PRT Gene Family AT5G40870 87.2 3.6e-249 858.2
Sed08g1480 . 1 472 PRT Gene Family AT5G40870 86.1 3.4e-247 851.7
Sed05g2667 . 1 459 PRT Gene Family AT5G40870 83.7 4.0e-232 801.6
Sed07g2767 . 11 470 PRT Gene Family AT5G40870 73.6 3.4e-207 718.8
Sed04g3616 . 3 470 PRT Gene Family AT5G40870 72.3 6.5e-206 714.5
Sed05g2668 . 1 411 PRT Gene Family AT5G40870 83.5 7.1e-205 711.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139