Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1394 ATGGCTCAGAAGCTTCAGTTGCAGCTCAAGGAGGTGGGATCCAAGCTCGAGGCTCTACCCGCCTCTAAAGATGCGCTCATTAAGCTTTTGAAGCAAGCTGCAGGATACCTTTCTGAAATAGATCAATCACCCTCGGCTTCAATTTTGGAGTCGATGCAACCGTTCATCAATGCAATTATCAAACCGGAATTGCTTCAACACCAAGATAGAGATGTCAAACTTCTAGTTGCAACGTGCATTTGTGAAATAACACGAATTACAGCACCCGAAGCTCCTTATAGCGATGATGTCTTAAAGGACATCTTTCACCTGATAGTGGGCACTTTTAGTGGATTAAATGATACCAATGGTCCTTCATTTGGTAGGAGAGTTGTCATTTTGGAGACACTTGCTAAGTATAGGTCGTGTGTTGTGATGTTGGACCTTGATTGTGATGATCTGGTCAATGAAATGTTCAGCACATTTCTTGCTGTTGCAAGGGAGGAACATCCCGAAAGTGTTCTCTCATCAATGCAAACTATAATGGTTGTTCTCTTAGAAGAGAGTGAGGACATCAGAGAGGAGCTCTTATTTACTCTGTTATCTACTTTAGGTCGCAATAAAAGTAATGTTTCTTCGGCTGCAAGGAAGCTTGCTATGAATGTCATACAGAATTCAGCTGGAAAGCTTGAAGCTGTTGTTAAGCAGTTTCTTGTAACTTCAATGTCAGGAGAAAACAAAGCACCATACAATCTGATTGATTACCATGAAGTTATTTATGACATGTATCGCTGTGCCCCTCAGATTCTATCAGGAATTGCTGCATATCTCATAGGAGAGTTACTGACTGATCAGCTGGATACCCGTCTAAAGGCCGTTGGATTGGTTGGAGACCTATTTTCTCTTCCAGGCTCTTCTATATCTGAAGTTTTTCAGCCAGTTTTCTCTGAGTTTTTAAAAAGACTGACCGATAGGATTGTTGAGGTTCGTATGTCTGTCCTAGTGCACGTGAAAAGCTGCCTACTGTCCAATCCTCTTAGGGATGAAGCATCTGAAATCATTTCTGCCCTTTCTGATCGGCTATTGGATTTTGATGAAAATGTCCGAAAACAAGTTGTAGCTGTAATTTGCGATGTGGCATGTCTTTCATTGAATGCAATTCCACTTGATACCATAAAGCTTGTTGCTGAACGTCTTCGAGATAAATCTCTACTTGTTAAAAAATATACAATGGAGAGGCTAGCAGAGATATACAAGGTCTATTCTGTGAAATCTTCTGCTGAATCAACCAATCCTGATGACTTTACATGGATTCCTGGGAGGATTTTGAGATGCTTTTATGACAAGGATTTCAGATCTGATATAATCGAATCTATTCTTTGTGGGTCACTTTTCCCATCTGAGTTTCCAGTGAAGGATAGAGTTAAACATTTGCTCAGAGTTTTCTCAACGTTTGACAAAATTGAACTCAAGGCTCTGGAGAAGATTCTGGAGCAAAAACAAAGGTTGCAGCAAGAGATGCAGAAGTACCTGTCTCTTAGGCATATGAACCAGGATGGTGATGTTCCCGAGACCCAGAAGAAAGCACTGTTCAGCTTTCGAATTATGTCTCGTTCATTTGCTGATCCTGCAAAATCTGAGGAAAATTTTCAGATTCTCGATCAATTGAAAGATTCCAATGTCTGGAGGATTTTGAGCAATCTAATTGATCCAAATACCAACTTCCATCAAGCTTGCAACTTGCGGGATGAGTTGCTTAAAATACTGGGGGAGAAACACCGCTTATATGATTTTCTGAACTCATTATCTGTGAAGTGTTCCTATTTACTTTTCAACAAGGAACATGTAAAAGAAATCCTTCAGGAAGTGGAGATTCAAAAATCTTCTGGCAGCATGCAAGACATTAAGTCTTCTATGACTACGTTAGTGATTCTTGCACGTTTCAGTCCTGTGTTATTTAGTGGGTCCGAGGAGGCACTAATCAATTTTCTTAAAGATGACAACGAGATAATAAAAGAAGGAATTCTGCACGTCTTAGCAAAAGCTGGTGGTACAATCCGTGAGCAACTGGCTGTCTCATCAAGCTCCATAGACCTTATATTAGAGCGGCAGTGCTTAGAAGGCACTAGAAGACAGGCCAAGTATGCTGTACACGCGTTGGCTGCTATAACAAAAGATGATGGGCTAAAATCACTCTCTGTTCTATACAAGAGGCTCGTAGATATGCTAGAGGAGAAGACTCACTTGCCTGCTGTACTACAGTCTCTGGGATGTATAGCTCAGACAGCAATGCCTGTTTTTGAAACCAGAGAGAATGAAATTGAAGAGTTCATTATAAATCAAATTCTTAAATGTGATTCTAAAGAGGGAGATGATGCAGAAACTTCTTGGGAGAACAAAAGTGACCTGTGCTTGTTAAAGATATTTGCCATAAAGACATTGGTCAAGAGCTATTTACCTGTTAAGGATGCTCACCTCCGTCTTGAAATCAATAGTCTTCTAGAGATCCTTGGTAACATACTTGTCCATGGAGAAATATCAAAGGATATCAAATCAAGTTCAGTTGACAAAGCCCATTTAAGACTTGCATCTGCAAAGGCAATTCTTCGACTATCAAAGCAATGGGATGATAAAATACCAATTAGTACCTTTCACTTAACCTTAAAAATACCAGAGACCACGTTTCCTCAAGCTAGGAAAGTATTCTTGAGCAAAGTTCATCAATACATAAAGGACAGAGTGTTGGATGCAAAATATATGTGTGCATTTTTATTTAACATAAATGGTTCCATTCCATTTGAGTTAGATGAGGAGAAACTAAATCTGGCTGATATTATTCAAATGCATTATCAAGCTAAAGCTCGGCAACTGTCAGTACAATCCGAAGCAAATTCAACTACAGCTTATCCTGAATACATAATACCATACGTGGTTCATGCTCTTGCTCACCATTCATGTCCAGATGTTGAGGAGTGCAAAGATGTCAAAGCATATGAATTAGTATATAGGCGATTGCACCTAATTCTTTCTCTACTAGTGCATAAAGATGAAGATGTCAAGTCAGATGCTAATACCATCAAGGACAAGGAAAATATATCTACCATATTATCCATCTTTCATAGTATTAAAAATAGTGAAGACATAGTTGATGCAGCAAAGTCAAAGATTTCATATGCAATTTGTGATCTTGGATTGTCAATCATTAAGAGATTGATCCTGAAAGAGGATGATTTACAAGGATTGACTACATCAGTTTCTCTGCCTGCCATACTGTACAAATTGAAGGAAAAGAAAGAAGGAGATGATTCTATTGCTGGTCAATCTGAAGGTGAAGCACAAACGTGGTTGGTTGAGGAAAATGTGTTGGCTCACTTTGAGGCACTCAAGCTAGAATTAGAGGCTATTTCTACCGGAGCTGCTGCAGATGAGGTTCAGAATAAAGATGAAAAAATTGGAAATGATGCGCCTCTAGGAAAAACGATAAAAGGTAAAAAGTCGCATGGATCAAGGAAAAATAGGAACAAAAAGGATAAAATGGTCAAGAAGAAACCAGTTGAAAAGGAAAATGCTGAAAACGATGTTGATATCTTGACAATGGTGAGGGAAATAAATTTGAGCACCACTAGCAAACTTGAACCAAGCAACGGTCATGAAGATTTTCCTGGTAAGAGAACGAATGTGGATGTAACACCTGCAAAGAGCAAAAAAAGAAAGCCTAGTGGTGCATCTTCCATTCCAGTCCCCAAACATAAAAGGCCATCATCTGATCATAGTCAGTCTATACCCAAAAGTTCTAAAAAGGGGCTTTTACCTGGCTCAGAAAAGGCCTCAGTTCAAGGAGTTTCTCCACTAGAGTCAAGTGAAATTGAAATGGGGAATAACCATGATTCAGATGATGATGCATCCAAGGAGAAAACGATCGTTGGAAGCAGCGAGTCAGATTTGTTGGTCTCGTGTTTGAAAAAGCCTACAGGTTCTTCCAAACCTAAAGTCAAAGTCACAGCCACAAGTCACTATGATGATGAAAATGACCTTAAAGATTACAGTGACCTTGATGTTAAGCATTCTAGTGCGCTGAAAAAGGTTGATAAGAACAACACGAGTAACTTGAAATCCAAATCCTCGAGTGGGGCTGTCAAGAAAAGGAAACGAAGAAGTATTGCAGGATTAGCAAAGTGCATGTTCAAGAAGGGTGAAAATGATATTGAAGACTTAATCGGATGCAAAATTAAAGTTTGGTGGCCCATGGATAAAAAATTTTATAAAGGCACCGTGAAATCTTATGACCCAATAAAAAGGAAACATGTGATACTATATGAAGATGGGGATGTTGAAGTTCTCAAACTTGAGAAGGAACGATGGGAGATCATTGACAGTCCACACAAGACTTCTAAGAAACCAAAACTGTCCAGGAGTCTTCCATCTGTCGATGCTACTCTTGGCTTGAAGAAAAAGGATTTGGGTGGTTCACGTTCGATTAGTAAACCATTGAACATAACGAAAGGAAAAAGGACGCCGAAGAAAAATTTGAAGTACGGTCAAAATGGTGCATCAAAGTTAAAATTTTCTGATCCTGGTGAGAAGGGGAGTTCAGAAATTTCAAACCCTGGAATTTCCAAAAGGTCTAATGTATATGACGAAATGAACTCAGGTGATTCTGAAGGGGAGCACGTTGAGAAGGAGTTGTTCACAGGCCAAGAGGACTCTGATAGGGAAATGAAGTTTGACTCAAGAGAACGAGGTGAAGGTGGTCACCATATTGAGGAATCTGATGAAGAAGATAAACCTGATGCTGCTGATGATGAAGAGAAGCTCGATGCCGCTGCTGATGAAGAGATGCCTGATGCTAATGAAGAAGAAAAGCCTGATACTGATGAGGAAGAAGAAAAACCCGATGGCGATGAACTTGATGAAGATCCTGAGAGTTTGGAGAAACATGCTGGCAATGCAAGAGGTAAATTGCAAAAGGAAGACATGGAAGCTGACGAATCAAGTTCAAGAGAAAACATTGGCGATGGCGACTCCGATTCTGGAAAGAATCAAGAGACTGTAGTCGGACAAAGTAGTCCTCGAGAGGAACAGAAAGGCGAGGTTGCTGAACTTTCTGATGATGAGCCTCTGTTCAAATGGAAGCATCGAGCAGGAAAACGAGGTTTGAGATGA 5142 39.91 MAQKLQLQLKEVGSKLEALPASKDALIKLLKQAAGYLSEIDQSPSASILESMQPFINAIIKPELLQHQDRDVKLLVATCICEITRITAPEAPYSDDVLKDIFHLIVGTFSGLNDTNGPSFGRRVVILETLAKYRSCVVMLDLDCDDLVNEMFSTFLAVAREEHPESVLSSMQTIMVVLLEESEDIREELLFTLLSTLGRNKSNVSSAARKLAMNVIQNSAGKLEAVVKQFLVTSMSGENKAPYNLIDYHEVIYDMYRCAPQILSGIAAYLIGELLTDQLDTRLKAVGLVGDLFSLPGSSISEVFQPVFSEFLKRLTDRIVEVRMSVLVHVKSCLLSNPLRDEASEIISALSDRLLDFDENVRKQVVAVICDVACLSLNAIPLDTIKLVAERLRDKSLLVKKYTMERLAEIYKVYSVKSSAESTNPDDFTWIPGRILRCFYDKDFRSDIIESILCGSLFPSEFPVKDRVKHLLRVFSTFDKIELKALEKILEQKQRLQQEMQKYLSLRHMNQDGDVPETQKKALFSFRIMSRSFADPAKSEENFQILDQLKDSNVWRILSNLIDPNTNFHQACNLRDELLKILGEKHRLYDFLNSLSVKCSYLLFNKEHVKEILQEVEIQKSSGSMQDIKSSMTTLVILARFSPVLFSGSEEALINFLKDDNEIIKEGILHVLAKAGGTIREQLAVSSSSIDLILERQCLEGTRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRENEIEEFIINQILKCDSKEGDDAETSWENKSDLCLLKIFAIKTLVKSYLPVKDAHLRLEINSLLEILGNILVHGEISKDIKSSSVDKAHLRLASAKAILRLSKQWDDKIPISTFHLTLKIPETTFPQARKVFLSKVHQYIKDRVLDAKYMCAFLFNINGSIPFELDEEKLNLADIIQMHYQAKARQLSVQSEANSTTAYPEYIIPYVVHALAHHSCPDVEECKDVKAYELVYRRLHLILSLLVHKDEDVKSDANTIKDKENISTILSIFHSIKNSEDIVDAAKSKISYAICDLGLSIIKRLILKEDDLQGLTTSVSLPAILYKLKEKKEGDDSIAGQSEGEAQTWLVEENVLAHFEALKLELEAISTGAAADEVQNKDEKIGNDAPLGKTIKGKKSHGSRKNRNKKDKMVKKKPVEKENAENDVDILTMVREINLSTTSKLEPSNGHEDFPGKRTNVDVTPAKSKKRKPSGASSIPVPKHKRPSSDHSQSIPKSSKKGLLPGSEKASVQGVSPLESSEIEMGNNHDSDDDASKEKTIVGSSESDLLVSCLKKPTGSSKPKVKVTATSHYDDENDLKDYSDLDVKHSSALKKVDKNNTSNLKSKSSSGAVKKRKRRSIAGLAKCMFKKGENDIEDLIGCKIKVWWPMDKKFYKGTVKSYDPIKRKHVILYEDGDVEVLKLEKERWEIIDSPHKTSKKPKLSRSLPSVDATLGLKKKDLGGSRSISKPLNITKGKRTPKKNLKYGQNGASKLKFSDPGEKGSSEISNPGISKRSNVYDEMNSGDSEGEHVEKELFTGQEDSDREMKFDSRERGEGGHHIEESDEEDKPDAADDEEKLDAAADEEMPDANEEEKPDTDEEEEKPDGDELDEDPESLEKHAGNARGKLQKEDMEADESSSRENIGDGDSDSGKNQETVVGQSSPREEQKGEVAELSDDEPLFKWKHRAGKRGLR 1713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10322973 10341416 - Sed0016925.1 Sed01g1394 700698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1394 1713 Pfam Sister chromatid cohesion protein PDS5 protein 24 1086 - -
Sed01g1394 1713 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 1 1610 IPR039776 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0007064(PANTHER)|GO:0007064(InterPro)
Sed01g1394 1713 SUPERFAMILY ARM repeat 50 738 IPR016024 -
Sed01g1394 1713 Gene3D - 1396 1446 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1139 1184 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1669 1683 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1586 1632 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1521 1542 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1543 1585 - -
Sed01g1394 1713 CDD Tudor_Agenet_AtEML-like 1399 1449 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1284 1300 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1686 1705 - -
Sed01g1394 1713 FunFam Binding protein 1394 1446 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1209 1228 - -
Sed01g1394 1713 Gene3D - 7 524 IPR011989 -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1156 1171 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1200 1301 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1633 1668 - -
Sed01g1394 1713 CDD PDS5 26 643 - -
Sed01g1394 1713 MobiDBLite consensus disorder prediction 1480 1713 - -
Sed01g1394 1713 Coils Coil 483 506 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1394 K11267 - - csv:101214549 2689.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1394 Sed-Chr1:10322973 Sed04g0493 Sed-Chr4:3632102 1.30E-173 dispersed
Sed01g1394 Sed-Chr1:10322973 Sed03g1642 Sed-Chr3:10492937 6.10E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g511 . . . . . . . . . . . . . . Sed01g1394 . . Bhi04g00044 Tan02g2759 Cmetu12g0413 . Hepe10g0220 . Lcy13g1828 . . . . . . . . . . . . . . . . Blo18g00010 . Bda13g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006986 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 35