Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1398 ATGGACTCTGGTGATGTTGAGCAATCCCTGCTTCCCATGCTGTCCGATTCTGATAAGAGGAATTTTCTCCAGAGAAGAAAATCTAACCGTTATGGAGGTAAACATTCAGGGGAAAATAATATTCAACCACAAAATTATGATGAAACGCCTCATCAATGTATGATTGGTACACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTGGCTACGTATTTGGGAGGAGGCACGCTTTGTTTCTTCCTTGTTCGGGATCAAATCGATGGGAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTGACAATGACCACTGTTGGATATGGTGATCTTGTTCCTCACAGCATAGTTGCAAAACTACTTGCTTGTGCTTATGTCTTTATTGGAATGACTCTTGGGGGGATGATTCTGAGCAAGGCGGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACTTGAGGAAAAAGATCAGCTACAGTGAGATTCTTCAGGAATCTGAGGCTCACAAAGTCAAATACAAATTCATTATGACTGGAATCATCCTTTGGGTTCTCGTCGTTGTCGGTACTCTTTTCTTGGCTGTGGTTGAGAAGCTAGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACAACTCTTGGCTATGGGGATGAGAGCTTCTCTACAACAGCCGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTGGCACAGTTCTTTCTGTACCTCGCAGAATTCCACACTGAAAGGAGACAGAAATCACTTGTGAATTGGGTTCTCTCCCGAGACCTCACATACTCAGATCTTGAAGAAGCAGACCTCGATAATGATAACGTAGTAAGTGCTGCTGAATTTGTTGTATATAAACTGAAGGAAATGGGAAAGATTCATCAGGATGATGTTTCACCCATACTTGACACTTTTAAGAAGCTTGACATTGATCAATCAGGAAACTTAACAGAAGCTGATTTAGTAACTTCATTGACATCGGCATAA 1035 40.87 MDSGDVEQSLLPMLSDSDKRNFLQRRKSNRYGGKHSGENNIQPQNYDETPHQCMIGTQVSFRKVFVLLATYLGGGTLCFFLVRDQIDGKKTNGIVDAIYFCVVTMTTVGYGDLVPHSIVAKLLACAYVFIGMTLGGMILSKAADYIVEKQEILLVKAMYLRKKISYSEILQESEAHKVKYKFIMTGIILWVLVVVGTLFLAVVEKLEFTDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAEFHTERRQKSLVNWVLSRDLTYSDLEEADLDNDNVVSAAEFVVYKLKEMGKIHQDDVSPILDTFKKLDIDQSGNLTEADLVTSLTSA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10376157 10377320 + Sed0023919.1 Sed01g1398 700702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1398 344 Gene3D - 159 270 - -
Sed01g1398 344 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 94 282 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Sed01g1398 344 Gene3D - 58 158 - -
Sed01g1398 344 ProSiteProfiles EF-hand calcium-binding domain profile. 312 344 IPR002048 GO:0005509(InterPro)
Sed01g1398 344 SUPERFAMILY EF-hand 270 342 IPR011992 -
Sed01g1398 344 SUPERFAMILY Voltage-gated potassium channels 60 161 - -
Sed01g1398 344 FunFam Calcium-activated outward-rectifying potassium channel 1 58 153 - -
Sed01g1398 344 SUPERFAMILY Voltage-gated potassium channels 158 277 - -
Sed01g1398 344 ProSitePatterns EF-hand calcium-binding domain. 286 298 IPR018247 -
Sed01g1398 344 ProSitePatterns EF-hand calcium-binding domain. 325 337 IPR018247 -
Sed01g1398 344 Pfam Ion channel 188 260 IPR013099 -
Sed01g1398 344 Pfam Ion channel 67 147 IPR013099 -
Sed01g1398 344 PRINTS Two pore domain K+ channel signature 220 229 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed01g1398 344 PRINTS Two pore domain K+ channel signature 103 131 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed01g1398 344 Gene3D - 280 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1398 Sed-Chr1:10376157 Sed07g2744 Sed-Chr7:42532299 2.90E-91 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1398 K05389 - csv:101214791 562.762