Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1398 | ATGGACTCTGGTGATGTTGAGCAATCCCTGCTTCCCATGCTGTCCGATTCTGATAAGAGGAATTTTCTCCAGAGAAGAAAATCTAACCGTTATGGAGGTAAACATTCAGGGGAAAATAATATTCAACCACAAAATTATGATGAAACGCCTCATCAATGTATGATTGGTACACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTGGCTACGTATTTGGGAGGAGGCACGCTTTGTTTCTTCCTTGTTCGGGATCAAATCGATGGGAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTGACAATGACCACTGTTGGATATGGTGATCTTGTTCCTCACAGCATAGTTGCAAAACTACTTGCTTGTGCTTATGTCTTTATTGGAATGACTCTTGGGGGGATGATTCTGAGCAAGGCGGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACTTGAGGAAAAAGATCAGCTACAGTGAGATTCTTCAGGAATCTGAGGCTCACAAAGTCAAATACAAATTCATTATGACTGGAATCATCCTTTGGGTTCTCGTCGTTGTCGGTACTCTTTTCTTGGCTGTGGTTGAGAAGCTAGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACAACTCTTGGCTATGGGGATGAGAGCTTCTCTACAACAGCCGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTGGCACAGTTCTTTCTGTACCTCGCAGAATTCCACACTGAAAGGAGACAGAAATCACTTGTGAATTGGGTTCTCTCCCGAGACCTCACATACTCAGATCTTGAAGAAGCAGACCTCGATAATGATAACGTAGTAAGTGCTGCTGAATTTGTTGTATATAAACTGAAGGAAATGGGAAAGATTCATCAGGATGATGTTTCACCCATACTTGACACTTTTAAGAAGCTTGACATTGATCAATCAGGAAACTTAACAGAAGCTGATTTAGTAACTTCATTGACATCGGCATAA | 1035 | 40.87 | MDSGDVEQSLLPMLSDSDKRNFLQRRKSNRYGGKHSGENNIQPQNYDETPHQCMIGTQVSFRKVFVLLATYLGGGTLCFFLVRDQIDGKKTNGIVDAIYFCVVTMTTVGYGDLVPHSIVAKLLACAYVFIGMTLGGMILSKAADYIVEKQEILLVKAMYLRKKISYSEILQESEAHKVKYKFIMTGIILWVLVVVGTLFLAVVEKLEFTDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAEFHTERRQKSLVNWVLSRDLTYSDLEEADLDNDNVVSAAEFVVYKLKEMGKIHQDDVSPILDTFKKLDIDQSGNLTEADLVTSLTSA | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10376157 | 10377320 | + | Sed0023919.1 | Sed01g1398 | 700702 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1398 | 344 | Gene3D | - | 159 | 270 | - | - | |
Sed01g1398 | 344 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 94 | 282 | IPR003280 | GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER) | |
Sed01g1398 | 344 | Gene3D | - | 58 | 158 | - | - | |
Sed01g1398 | 344 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 312 | 344 | IPR002048 | GO:0005509(InterPro) | |
Sed01g1398 | 344 | SUPERFAMILY | EF-hand | 270 | 342 | IPR011992 | - | |
Sed01g1398 | 344 | SUPERFAMILY | Voltage-gated potassium channels | 60 | 161 | - | - | |
Sed01g1398 | 344 | FunFam | Calcium-activated outward-rectifying potassium channel 1 | 58 | 153 | - | - | |
Sed01g1398 | 344 | SUPERFAMILY | Voltage-gated potassium channels | 158 | 277 | - | - | |
Sed01g1398 | 344 | ProSitePatterns | EF-hand calcium-binding domain. | 286 | 298 | IPR018247 | - | |
Sed01g1398 | 344 | ProSitePatterns | EF-hand calcium-binding domain. | 325 | 337 | IPR018247 | - | |
Sed01g1398 | 344 | Pfam | Ion channel | 188 | 260 | IPR013099 | - | |
Sed01g1398 | 344 | Pfam | Ion channel | 67 | 147 | IPR013099 | - | |
Sed01g1398 | 344 | PRINTS | Two pore domain K+ channel signature | 220 | 229 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Sed01g1398 | 344 | PRINTS | Two pore domain K+ channel signature | 103 | 131 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Sed01g1398 | 344 | Gene3D | - | 280 | 344 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1398 | Sed-Chr1:10376157 | Sed07g2744 | Sed-Chr7:42532299 | 2.90E-91 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1398 | K05389 | - | csv:101214791 | 562.762 |