Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1434 ATGGTCATAACATCTCCTCCCATGGCTGCAACCATTCCGAAACTCAACAACATGCTCACTTCTCTCACTTTCCTGTTCCTCCTCTGTTTCCTCCTCATCCATGGAAACGCTCAAACCCCTGTTTCTTACCCTTATCGCGCATGTCTATCCGACAATTTCACTCAGAACAGCACTTACCTCTCCAACCTTAATCTTCTCTTTTCAAACCTCACCGCCAACGGCCCCACCAGAAACAGATTCTTCGACGCCTCCGTCGGCCGACCGCCAAACGACACCGTTTACGGTCTCTTCCAGTGCCGTGGAGACGTCACCGACCGCGAATGCCAAAACTGCTTGGCCACCGCGACCAGAGACACAGCCCGCCTGTACTGTCCCCTGCGAAAAGGGGCAGTGATTTGGTACGACGAGTGCACGCTCCGCTACTCCGACCAGTCATTCTTTTCCACGGTGTCCACAGAGCCAAGCTTGGAGTTACTGAACACGGGCGACATCGACCTGGACAAGTCTCGGTTCAACCAACTGGTTATGTCCACCTTGCGGGCCACCGCGGCCAACGCCACCACAGAAGGCGGCGGATTGTTTGCAACCGGGGAGGCTAATTTCACATCGGATCTGACCCTTTACACGTTAGCTCAGTGCACTGGCGATTTGTCCAATTCCAATTGCCAAGATTGCTTGACGCAATCGATCCGTTCTATCCCCAGTTGTTGCACTAATAAACGAGGCGGCAGAGTGTTGCTTCCCAGTTGTTACGTTCGTTACGAAGTGTACATGTTTTACGCACTAACGGCAACGAATTCGCCGCCGGCAACCACCACGCCCAATTCCACAACTCCGACACCGCCTATTCTTTCTCCTCCTCCGACGGGGAAGAGCAGATCCTCCACGGTGTTAATTGTGGCAATTGCGGTTCCAATTTGTGTCTCCATGCTGCTATTTATTCTGGGATGCTGTTTCCTACGCCGAAGAGCGAAGGAGAAATACACCGCTGTAACCGAAGATAGTGTTGTTAACGAGATGACCACTTTAGAATCTCTGCAATTTGATTTCAAAACCATCGATGCTGCTACCAACAAATTCTCGGAGGAAAACAGGTTGGGAGAAGGTGGATTTGGTGTTGTCTTCAAGGGTAGGCTTGAAAATGGGCAAGAGATTGCAGTGAAACGACTGTCAAAAGGATCTCTACAAGGTTCTGAAGAGTTCAAGAATGAGGTTATGTTGGTTGTTAAACTTCAACATAGAAACCTAGTGCGGCTATTGGGATTCTGCTTGGAGGGTGAAGAGAAGCTACTCATCTATGAATACATCCCCAACAAAAGCCTTGACTTTTTCTTATTTGATCCAGAGAGACAACGCGAGTTGAGTTGGTTGAAACGATACAAAATCATCCATGGAATTGCTCGGGGAATCTTATATTTGCATGAAGATTCACGTCTTCGAATTATTCATCGTGATCTTAAAGCGAGTAACATCTTGTTAGATGGAGATATGAATGCAAAAATTTCAGACTTTGGGATGGCTAGAATTGTTCAAATGGATCAAACTCAAGGAAACACAAGTAGGATTGTTGGTACTTATGGTTACATGTCTCCCGAATATGCAATGCATGGAAACTTTTCTATGAAATCAGATGTGTATAGTTTTGGAGTCCTAGTCTTGGAGATTTTAAGTGGCAAGAAAAACAATACCTTTTACTTGTCAGATCTTGCCGAAGACATTTTGACCTATGCTTGGAAACTTTGGAAGGATGGAATACCATTAGAATTATTGGACCCAAGTTTGAGAGATAACTACTCAAGAAATGAGGTGCTCAGATGCATTCATATTGCTTTATTATGTGTTCAGGAAGATCCTAGCCGTAGACCTTCCATGGCTTCCATTGTTCTTATGCTTAATAGTTATTCGGTTACTTTGCCATTACCGGAAGAGCCAGCATTCTTTATGCGTAGTAAAGATCAAGGTATTGTAATGGACAGTGATCAGTTTACAAATAAGTCTCCTCAATGGTCGGCCAATGAAACATCGATATCTGAGTTGGAACCTCGATGA 2049 45.83 MVITSPPMAATIPKLNNMLTSLTFLFLLCFLLIHGNAQTPVSYPYRACLSDNFTQNSTYLSNLNLLFSNLTANGPTRNRFFDASVGRPPNDTVYGLFQCRGDVTDRECQNCLATATRDTARLYCPLRKGAVIWYDECTLRYSDQSFFSTVSTEPSLELLNTGDIDLDKSRFNQLVMSTLRATAANATTEGGGLFATGEANFTSDLTLYTLAQCTGDLSNSNCQDCLTQSIRSIPSCCTNKRGGRVLLPSCYVRYEVYMFYALTATNSPPATTTPNSTTPTPPILSPPPTGKSRSSTVLIVAIAVPICVSMLLFILGCCFLRRRAKEKYTAVTEDSVVNEMTTLESLQFDFKTIDAATNKFSEENRLGEGGFGVVFKGRLENGQEIAVKRLSKGSLQGSEEFKNEVMLVVKLQHRNLVRLLGFCLEGEEKLLIYEYIPNKSLDFFLFDPERQRELSWLKRYKIIHGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNAKISDFGMARIVQMDQTQGNTSRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEILSGKKNNTFYLSDLAEDILTYAWKLWKDGIPLELLDPSLRDNYSRNEVLRCIHIALLCVQEDPSRRPSMASIVLMLNSYSVTLPLPEEPAFFMRSKDQGIVMDSDQFTNKSPQWSANETSISELEPR 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10561428 10564670 - Sed0020131.1 Sed01g1434 700738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1434 682 Pfam Salt stress response/antifungal 168 256 IPR002902 -
Sed01g1434 682 Pfam Salt stress response/antifungal 51 144 IPR002902 -
Sed01g1434 682 MobiDBLite consensus disorder prediction 660 682 - -
Sed01g1434 682 Pfam Protein tyrosine and serine/threonine kinase 363 629 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1434 682 FunFam Cysteine-rich receptor-like protein kinase 25 154 259 - -
Sed01g1434 682 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 41 146 - -
Sed01g1434 682 CDD STKc_IRAK 366 632 - -
Sed01g1434 682 MobiDBLite consensus disorder prediction 274 288 - -
Sed01g1434 682 SMART serkin_6 360 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1434 682 ProSiteProfiles Gnk2-homologous domain profile. 41 146 IPR002902 -
Sed01g1434 682 ProSiteProfiles Gnk2-homologous domain profile. 152 259 IPR002902 -
Sed01g1434 682 Gene3D Phosphorylase Kinase; domain 1 321 435 - -
Sed01g1434 682 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 124 647 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Sed01g1434 682 FunFam Cysteine-rich receptor-like protein kinase 10 321 435 - -
Sed01g1434 682 FunFam cysteine-rich receptor-like protein kinase 10 436 638 - -
Sed01g1434 682 SUPERFAMILY Protein kinase-like (PK-like) 345 663 IPR011009 -
Sed01g1434 682 Gene3D - 41 146 IPR038408 -
Sed01g1434 682 Gene3D - 155 259 IPR038408 -
Sed01g1434 682 MobiDBLite consensus disorder prediction 268 289 - -
Sed01g1434 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1434 682 ProSiteProfiles Protein kinase domain profile. 360 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1434 682 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524(InterPro)
Sed01g1434 682 Gene3D Transferase(Phosphotransferase) domain 1 436 638 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1434 Sed-Chr1:10561428 Sed01g1439 Sed-Chr1:10578932 9.80E-261 dispersed
Sed06g1658 Sed-Chr6:41341320 Sed01g1434 Sed-Chr1:10561428 1.80E-91 dispersed
Sed08g2334 Sed-Chr8:36713117 Sed01g1434 Sed-Chr1:10561428 3.60E-53 dispersed
Sed01g1432 Sed-Chr1:10547624 Sed01g1434 Sed-Chr1:10561428 2.70E-146 proximal
Sed01g1433 Sed-Chr1:10555796 Sed01g1434 Sed-Chr1:10561428 1.30E-53 tandem
Sed01g1434 Sed-Chr1:10561428 Sed01g1435 Sed-Chr1:10569950 1.60E-10 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78603 PF07714 PK_Tyr_Ser-Thr 8.40E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1434 - - - 0.0