Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1439 ATGACTTTCCTGTTCCTCCTCTGTTTCCTCCTCATCCATGGAAACGCTCAAACCTCAGTTTCTTACCCTTATCGCGCATGTTTATCCCACAATTTCACCCACAATAGCACCTATGAATCCAACCTTCATCTTCTCTTTTCAAATCTCTCCGCCAACACAAACAGATTCTTCAACACTTCCGTAAACGACGCCGTTTACGGTCTGTTCCAATGTCGAGGAGACGTCACCGACCGTGAATGCCAAAACTGCTTGGCCACCGCTACAAGAGGCGCAGCCGGAAAGTACTGTCCCATGAGAAAAGGGGCAGTGATTTGGTACGACGATTGCACACTCCGCTATTCCGACCAATACTTCTTTTCCACAGTCTCCACTGACCCAGGGTTGCTGTTACTGAATACTGGCGATATAGACCTGGACAAGGCTCGGTTCAACCAACTGGTTATGACCACCTTGTGGGCCGGCGCGGCTCACGCGGCCGACCACGCCCAATTGTTTGCAACCCAGGAGGCTGATTTCACCACGGATCTGACGCTTTACACATTGGCTCAATGTACTGGCGATTTGTCCAGTTTGAATTGCCAAGATTGCTTAACTCAAGCCATCCGTTCTATTCCGAGCTGTTGTACTAATAAACGAGGCGGCAGAGTTTTGCTTCCTAGCTGTTATGTTCGTTACGAAGTTTATGCGTTTTATTACATCACCCCGAACAATCCGGCTCCGCCTCCTCCTCCTCCCTCAGGGGAAAACAGAGTCGCAACGGTGATAATTTTGGCCATTGTGATTTCATTTAGTGTCTCCATTCTGCTTTTTGGGGGCTTCTATGTCATGTGTTGGAGAGCAAACACGAGGGATGATTACACTCTTGCAAATGAAGATAGTGATTTTGATGAGATAACCACCACTGAGGAGTCTATACAATTTGATTTCAATACTATTGATGCTGCTACAAACAAATTCTCTGTGGAAAACAAGTTGGGTGAAGGTGGATTTGGTCCAGTCTACAAGGGTACACTTGGTAATGGACGAGAGATAGCAGTGAAAAGATTATCAAGTAGATCATTGCAAGGTTCTAAAGAGTTCAAGAATGAGATTATGCTGGTAGCTAAGCTTCAACATAGAAATTTAGTAAGACTATTGGGATTCTGCTTGGATGGTGAAGAAAAGATACTTGTCTATGACTACATTTCCAACAAAAGCCTTGACTATTTCTTATTTGATCCTATAAGACAGAGGGAGCTGGATTGGTCAATGCGATATAACATCATCAATGGAATTGCTCGAGGAATGTTATATCTACATGAAGATTCACAACTTAAAATTATTCATCGGGATCTTAAAGCAAGTAACATCTTGTTAGATAGAGATATGAATCCAAAAATTTCAGATTTTGGTTTGGCGAGAATCATCCGTTTAGATCAAACTCAAGAAAATACCAATAGAATTGTTGGTACCTATGGTTATATGGCTCCTGAGTATGCAATGCATGGAACATTTTCTCTAAAATCTGATGTATATAGCTTCGGAGTCTTAATCATGGAGATCATAAGCGGAAAGAAAAACAACACATTTTACTTGTCTAATCTTGCTGATGACATGGTAACCTATGCTTGGAAACTTTGGAAGGACGAAACACCATTCGAATTACTGGACCCGAGTTTGAGAGACGATTACTCAAGAGATGAGGTGCTAAGGTGCATCCATATTGCTTTATTATGTGTTTCGGAGGATATTGGGAGAAGACCCTCCATGGCATCAATTATTCTAATGCTTAATAGTTATTCGGTTACTTTGCCATTACCAAAAGAGCCAACATCTTTCTTGAGCAATGCATACCAGAGGTTGCATTTGCGATAG 1854 42.45 MTFLFLLCFLLIHGNAQTSVSYPYRACLSHNFTHNSTYESNLHLLFSNLSANTNRFFNTSVNDAVYGLFQCRGDVTDRECQNCLATATRGAAGKYCPMRKGAVIWYDDCTLRYSDQYFFSTVSTDPGLLLLNTGDIDLDKARFNQLVMTTLWAGAAHAADHAQLFATQEADFTTDLTLYTLAQCTGDLSSLNCQDCLTQAIRSIPSCCTNKRGGRVLLPSCYVRYEVYAFYYITPNNPAPPPPPPSGENRVATVIILAIVISFSVSILLFGGFYVMCWRANTRDDYTLANEDSDFDEITTTEESIQFDFNTIDAATNKFSVENKLGEGGFGPVYKGTLGNGREIAVKRLSSRSLQGSKEFKNEIMLVAKLQHRNLVRLLGFCLDGEEKILVYDYISNKSLDYFLFDPIRQRELDWSMRYNIINGIARGMLYLHEDSQLKIIHRDLKASNILLDRDMNPKISDFGLARIIRLDQTQENTNRIVGTYGYMAPEYAMHGTFSLKSDVYSFGVLIMEIISGKKNNTFYLSNLADDMVTYAWKLWKDETPFELLDPSLRDDYSRDEVLRCIHIALLCVSEDIGRRPSMASIILMLNSYSVTLPLPKEPTSFLSNAYQRLHLR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10578932 10582592 - Sed0006986.1 Sed01g1439 700743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1439 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1439 617 FunFam cysteine-rich receptor-like protein kinase 10 395 597 - -
Sed01g1439 617 ProSiteProfiles Gnk2-homologous domain profile. 124 230 IPR002902 -
Sed01g1439 617 Gene3D - 19 118 IPR038408 -
Sed01g1439 617 Gene3D - 129 230 IPR038408 -
Sed01g1439 617 SMART serkin_6 319 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1439 617 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 94 605 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Sed01g1439 617 Pfam Protein tyrosine and serine/threonine kinase 321 587 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1439 617 ProSiteProfiles Protein kinase domain profile. 319 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1439 617 SUPERFAMILY Protein kinase-like (PK-like) 304 607 IPR011009 -
Sed01g1439 617 FunFam Cysteine-rich receptor-like protein kinase 10 281 394 - -
Sed01g1439 617 Gene3D Transferase(Phosphotransferase) domain 1 395 597 - -
Sed01g1439 617 ProSiteProfiles Gnk2-homologous domain profile. 20 118 IPR002902 -
Sed01g1439 617 Pfam Salt stress response/antifungal 30 116 IPR002902 -
Sed01g1439 617 Pfam Salt stress response/antifungal 151 227 IPR002902 -
Sed01g1439 617 CDD STKc_IRAK 325 591 - -
Sed01g1439 617 FunFam Cysteine-rich receptor-like protein kinase 25 126 230 - -
Sed01g1439 617 Gene3D Phosphorylase Kinase; domain 1 282 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1434 Sed-Chr1:10561428 Sed01g1439 Sed-Chr1:10578932 9.80E-261 dispersed
Sed01g1436 Sed-Chr1:10570500 Sed01g1439 Sed-Chr1:10578932 1.30E-48 dispersed
Sed01g1439 Sed-Chr1:10578932 Sed08g2336 Sed-Chr8:36723894 3.40E-204 dispersed
Sed08g1402 Sed-Chr8:28596307 Sed01g1439 Sed-Chr1:10578932 3.90E-79 dispersed
Sed11g1684 Sed-Chr11:32081368 Sed01g1439 Sed-Chr1:10578932 1.90E-14 dispersed
Sed01g1438 Sed-Chr1:10573747 Sed01g1439 Sed-Chr1:10578932 1.20E-84 tandem
Sed01g1439 Sed-Chr1:10578932 Sed01g1440 Sed-Chr1:10578932 1.80E-277 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78606 PF07714 PK_Tyr_Ser-Thr 1.80E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1439 - - - 0.0