Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1441 ATGTTGGACATGCTCAAATTTCGTATCTTTGTGTTCCTAATCAGCTGCGTTATCCATATAAACGCTCAGACAGTAAGCGAATTGCCGCATCAAAGTTGCTTGGGCGCTAATTTCACGCCGCAAAGCGCGTATCAGTCCAACCTTAATCTCCTCTTCACAAAGCTCTCCGACGTGGCCCCCATCGACAAATTCTACAACACATCCGTCGGCAAAACCCCAAACGACACCGTTTACGGTCTGTTCCAGTGCCAAGGAGACATCTTCAACGAGAATTGTCGAGCTTGCGTGGCCGAAGCCACCCGAGACACAGCCCAACAGAACTGTTCTTTAAGGAAAGGCGCCGTGGCTTGGTACGATGAGTGCATACTCCGCTATTCCGACCAGCCTTTTCTGTCCGTCATGTCCACAAGGCCGCGTCTGATGTTGCCAAGCCACGATGGCATCGGCGTTGACCCGGTTCGGCTCATCCAATTGGTGGTGTCCACTTTGAGGGACGTTGCTAACTCAACATCGCAGGAACAATTGTACTTTGGAACCAAAGATGCCAATTTCACATTGAATATAACGCTTTACACGTTGGCGCAGTGTACTGGGGATTTGTCGAATGGGGATTGCTTGGAATGTTTGACACAAACTATTGATTTGATTCCCGATTGTTGTGGTGGTAAACAAGGTGGCAGAGTTTTGTTCCCTAGTTGTTATGTTCGATATGAAATTTATCCCTTTTATGGGTTGGCTAATGGGATCACTCCAACTCAGATCTTTCCGGTAGTTCCAGGAATGTCATGTGCAGTTGTGGGTGAAATGGCAAATGATGAATCTCTGCAATTTGATTTCAATACAATTGATGTTGCTACTAACAATTTCTCAGAGGAAAACAAGTTGGGTGAAGGTGGATTTGGTGCAGTCTATAAGGGTAGGCTAGAAAATGGACAAGAAATAGCAGTGAAGAGATTATCAAGAAGATCTTTGCAAGGTGCCAAAGAGTTCAAAAATGAGGTTATGGTTGTTGCTAAGCTACAACACAGAAATCTTGTAAAGTTGTTGGGATTCTGCTTGGAGGGTGAAGAGAAGATACTCGTCTATGAATATATTCCTAACAAAAGTCTGGATTGTTTCCTGTTTGATCCTCAGGGACAAAGAGAGTTGGATTGGTGTGGACGATACAAGATCATCAATGGAATTGCTCGAGGTGTTTTATATCTACATGAGGATTCTCGACTTCGAATTATTCATCGTGATCTTAAAACCAACAATGTTTTATTAGATGAGAATATGGATCCAAAAATTTCAGATTTTGGTATGGCAAGAATCATTCAAGTGGATCAAACTCAAGGAAATACTAACCGAATTGTTGGTACCTACGGATACATGTCTCCTGAATATGCAATGCATGGAAATTTTTCAACAAAATCTGATGTGTATAGCTACGGAATCTTAGTCTTAGAGATCATCAGTGGAAAGAAAAATAACAGCTTTTATCGATCTGATCTTACCCGAAGTATCTCAAACTATACTTGGGATCTATGGACGAATGGAACAACATTAGAATTGATGGACTCAAGTTTGGGAGACAATTACTCGAGAGATGAGGTGCTTAGATGCATTCATATTGCTTTACTGTGTGTTCAAGAGGATCCGGTTCGTAGACCCTCCATGACATCCATTGTTCTTATGTTGAATAGTTATTCTATTCCCTTGCCTTCACCTAAAAAACCAGCATTCTTATTTCGTAGCATTGTAACAAATCATGACCAGTCTGTGAATAGACGTTCATTGTGGTCCAACAATCAAATGTCTATTTCTGAGTTGCATGCCCGATGA 1824 42.11 MLDMLKFRIFVFLISCVIHINAQTVSELPHQSCLGANFTPQSAYQSNLNLLFTKLSDVAPIDKFYNTSVGKTPNDTVYGLFQCQGDIFNENCRACVAEATRDTAQQNCSLRKGAVAWYDECILRYSDQPFLSVMSTRPRLMLPSHDGIGVDPVRLIQLVVSTLRDVANSTSQEQLYFGTKDANFTLNITLYTLAQCTGDLSNGDCLECLTQTIDLIPDCCGGKQGGRVLFPSCYVRYEIYPFYGLANGITPTQIFPVVPGMSCAVVGEMANDESLQFDFNTIDVATNNFSEENKLGEGGFGAVYKGRLENGQEIAVKRLSRRSLQGAKEFKNEVMVVAKLQHRNLVKLLGFCLEGEEKILVYEYIPNKSLDCFLFDPQGQRELDWCGRYKIINGIARGVLYLHEDSRLRIIHRDLKTNNVLLDENMDPKISDFGMARIIQVDQTQGNTNRIVGTYGYMSPEYAMHGNFSTKSDVYSYGILVLEIISGKKNNSFYRSDLTRSISNYTWDLWTNGTTLELMDSSLGDNYSRDEVLRCIHIALLCVQEDPVRRPSMTSIVLMLNSYSIPLPSPKKPAFLFRSIVTNHDQSVNRRSLWSNNQMSISELHAR 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10584995 10587836 - Sed0003069.1 Sed01g1441 700745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1441 607 SMART serkin_6 289 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1441 607 ProSiteProfiles Gnk2-homologous domain profile. 136 242 IPR002902 -
Sed01g1441 607 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Sed01g1441 607 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 67 575 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed01g1441 607 Pfam Protein tyrosine and serine/threonine kinase 292 558 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1441 607 Gene3D Phosphorylase Kinase; domain 1 262 364 - -
Sed01g1441 607 CDD STKc_IRAK 295 561 - -
Sed01g1441 607 Pfam Salt stress response/antifungal 36 128 IPR002902 -
Sed01g1441 607 Pfam Salt stress response/antifungal 162 239 IPR002902 -
Sed01g1441 607 Gene3D - 26 130 IPR038408 -
Sed01g1441 607 Gene3D - 151 242 IPR038408 -
Sed01g1441 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1441 607 FunFam cysteine-rich receptor-like protein kinase 10 365 567 - -
Sed01g1441 607 ProSiteProfiles Protein kinase domain profile. 289 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1441 607 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524(InterPro)
Sed01g1441 607 Gene3D Transferase(Phosphotransferase) domain 1 365 566 - -
Sed01g1441 607 SUPERFAMILY Protein kinase-like (PK-like) 274 591 IPR011009 -
Sed01g1441 607 FunFam Cysteine-rich receptor-like protein kinase 10 261 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1441 Sed-Chr1:10584995 Sed08g2336 Sed-Chr8:36723894 1.60E-209 dispersed
Sed01g1444 Sed-Chr1:10595340 Sed01g1441 Sed-Chr1:10584995 1.00E-71 dispersed
Sed01g1440 Sed-Chr1:10578932 Sed01g1441 Sed-Chr1:10584995 2.20E-145 tandem
Sed01g1441 Sed-Chr1:10584995 Sed01g1442 Sed-Chr1:10588685 1.90E-279 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78608 PF07714 PK_Tyr_Ser-Thr 4.40E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1441 - - - 0.0