Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1442 ATGTTGGACATGCTCAAATTTCATATTTTCCTGTTCCTTTTGATCAGCAGCGTTATCCATGGACACAAATTGGCATATCATAGTTGCTTGGGCGCCAATTTCAGCCTGCAGAGCACATATCATTCCAACCTCAATCTCCTCTTCACAAAGTTCTCCCACGTGGCACCCATCGACAGATTCTACAGCACGACCATCGGCAGAACCCCAAACGACACCGTTTACGGTCTGTTCCAGTGTCAGGGGGACGTGGTCAACGAGAACTGTCGAGCTTGCGTGGCCGAAGCCACCAGAGACACGTCCCAACAGAACTGTGCTCTAAGGAAAGGCGTTGTGGGTTGGTACGATGAGTGCGTACTCCGTTATTCCGACCAGCCTTTCCTTTCCGTTATGTCCACAACGCCACGTCTGATGTTGCCTAGCCACGACGTCATTGGCGTCGACCCGGTTCGGTTCAACCAGCTCGTGGTGTCCACATTGAGAGTTACCGCCGGTTGGGCGGCTAATTCGTCTTTGCAGGAACAACTGTTTGCAACCCATGTTGCCAATTTCACATCTAACATAACGGTTTACACGTTGGCGCAGTGTACTGGGGATTTGCCCATTGTGGATTGCTTGGAATGTTTGACGCAAACTATTGATTTGATTCCCGATTGTTGTAGTGGTAAACAAGGTGGCAGAGTTTTGTTTCCTAGTTGTTATGTTCGTTATGAAATTTCTCTCTTTTATGGGCCGACTCTGCTGCCCGCTCCAGCCTACGATATTCCAATAACTCCAGAGAGTTCATCTGCGGGTATAATTGCGTCCATTGTGGTACCCATTTCTTTGTCGATACTGCTTTTTCTGGGCTGGTGTTTCCTGCGCCGAAGATCAAAGACTAAGAAATACACTGCCAACCAACATGCTGTTGTGGGTGAGATGACAAATGTTGAATCTCTGCAATTTGATTTCAATACAATTGATGTTGCTACTAACAATTTCTCAGAGGAAAACAAGTTGGGTGAAGGTGGATTTGGTGCAGTCTTTAAGGGCAGGCTAGAAAATGGACAAGAAATAGCAGTGAAGAGATTATCAAGAAGATCTTTTCAAGGTGTAGAGGAGTTCAAAAATGAGGTCATGGTTGTTGCTAAACTACAACATAGAAATCTAGTAAGGTTATTAGGATTCTGCTTGGAGGGTGAAGAGAAGATTCTTGTCTATGAATATATTCCTAACAAAAGTCTGGATTGTTTCCTTTTTGATCCTCAGGAACAAAGAGGGTTGGATTGGTGTGGGCGCTATAAGATCATTAATGGAATTGCACGAGGAGTTCTATATCTACATGAAGATTCTCGACTTCGAATTATTCATCGTGATCTGAAAACTAGCAATGTTTTATTAGATGAGAATATGGATCCAAAAATTTCAGACTTTGGTTTGGCAAGGATCATACAAGTGGATCAAACTCAAGGAAATACTAATAGAATTGCTGGTACCTATGGTTACATGTCTCCTGAATATGCAATGCATGGAAACTTCTCAACAAAATCAGATGTGTATAGTTATGGAGTCTTAGTTTTGGAGATCATCAGTGGACAGAGAAATAGCACATTTTATCTATCGTCAGATCTTACTCAAAACATCTTAAATTGCACTTGGGATCTATGGACAAATGGAACAGCACTAGAATTGTTGGACCCAAGTCTCAGAGACAATTGTTCGAGAGACGAGGTGCTTAGATGTATTCATATTGCTTTACTATGTGTTCAAGAGGATCCTATTCGTAGACCATCCATGACATCCATTGTTCTTATGTTAAGTAGTTATTCGATTCCTTTGCCTTCACCTAAGCGGCCAGCATTCTTACTTCGTAGTGCTAATAATAGCACTGAAACAAATCATGGTCAGCCTATGTATAGGCCCTCATCTTGGTCAAACAATCAAATGTCTATATCTGAGCTGCAAGCACGATAG 1950 42.77 MLDMLKFHIFLFLLISSVIHGHKLAYHSCLGANFSLQSTYHSNLNLLFTKFSHVAPIDRFYSTTIGRTPNDTVYGLFQCQGDVVNENCRACVAEATRDTSQQNCALRKGVVGWYDECVLRYSDQPFLSVMSTTPRLMLPSHDVIGVDPVRFNQLVVSTLRVTAGWAANSSLQEQLFATHVANFTSNITVYTLAQCTGDLPIVDCLECLTQTIDLIPDCCSGKQGGRVLFPSCYVRYEISLFYGPTLLPAPAYDIPITPESSSAGIIASIVVPISLSILLFLGWCFLRRRSKTKKYTANQHAVVGEMTNVESLQFDFNTIDVATNNFSEENKLGEGGFGAVFKGRLENGQEIAVKRLSRRSFQGVEEFKNEVMVVAKLQHRNLVRLLGFCLEGEEKILVYEYIPNKSLDCFLFDPQEQRGLDWCGRYKIINGIARGVLYLHEDSRLRIIHRDLKTSNVLLDENMDPKISDFGLARIIQVDQTQGNTNRIAGTYGYMSPEYAMHGNFSTKSDVYSYGVLVLEIISGQRNSTFYLSSDLTQNILNCTWDLWTNGTALELLDPSLRDNCSRDEVLRCIHIALLCVQEDPIRRPSMTSIVLMLSSYSIPLPSPKRPAFLLRSANNSTETNHGQPMYRPSSWSNNQMSISELQAR 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10588685 10591512 - Sed0016900.1 Sed01g1442 700746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1442 649 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 110 613 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Sed01g1442 649 Gene3D Phosphorylase Kinase; domain 1 287 401 - -
Sed01g1442 649 Gene3D Transferase(Phosphotransferase) domain 1 402 604 - -
Sed01g1442 649 FunFam cysteine-rich receptor-like protein kinase 10 402 605 - -
Sed01g1442 649 FunFam Cysteine-rich receptor-like protein kinase 10 287 401 - -
Sed01g1442 649 ProSiteProfiles Protein kinase domain profile. 326 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1442 649 Gene3D - 21 126 IPR038408 -
Sed01g1442 649 Gene3D - 145 241 IPR038408 -
Sed01g1442 649 Pfam Salt stress response/antifungal 159 237 IPR002902 -
Sed01g1442 649 Pfam Salt stress response/antifungal 32 124 IPR002902 -
Sed01g1442 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1442 649 SUPERFAMILY Protein kinase-like (PK-like) 311 631 IPR011009 -
Sed01g1442 649 Pfam Protein tyrosine and serine/threonine kinase 329 596 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1442 649 ProSiteProfiles Gnk2-homologous domain profile. 22 126 IPR002902 -
Sed01g1442 649 MobiDBLite consensus disorder prediction 622 649 - -
Sed01g1442 649 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524(InterPro)
Sed01g1442 649 SMART serkin_6 326 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1442 649 ProSiteProfiles Gnk2-homologous domain profile. 132 241 IPR002902 -
Sed01g1442 649 CDD STKc_IRAK 332 598 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1442 Sed-Chr1:10588685 Sed08g2336 Sed-Chr8:36723894 8.90E-203 dispersed
Sed14g1382 Sed-Chr14:22577228 Sed01g1442 Sed-Chr1:10588685 2.70E-95 dispersed
Sed01g1441 Sed-Chr1:10584995 Sed01g1442 Sed-Chr1:10588685 1.90E-279 tandem
Sed01g1442 Sed-Chr1:10588685 Sed01g1443 Sed-Chr1:10593317 1.70E-185 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78609 PF07714 PK_Tyr_Ser-Thr 2.40E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1442 - - - 0.0