Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1443 ATGAAGACCAAATCAAAATCAATGTACAATGAGTGCATAAATATTATGAGATCTTCTCACTATTTCAACGTGGATACTCAACTTGGAGATGAGATGACCATTGTTGAATCTTTGCAATTTGATTTCAATACAGTTGATGTTGCTACTAATAATTTCTCAGTGGAAAACAAGTTGGGTGAAGGTGGATTTGGTGCAGTCTACAAGGGTAGGCTGGACAATGGCCAAGAAATAGCAGTGAAGAGATTATCAAGAAGATCTTTGCAAGGTGGAGAGGAGTTCAAGAATGAGGTCATGGTTGTTGCTAAGCTACAGCATAGAAATCTAGTTAGGCTATTGGGATTTTGCTTGGAGGGTGAAGAGAAAATTCTTATCTATGAATATATTCCTAACAAAAGTCTCGACGGTTTCCTATTTGATCCTCAAGGACAAAGAGAGTTGGATTGGTGTGGACGATATAAGATCATCAACGGAATTGCTCGTGGAATTTTATATCTCCATGAAGATTCTCGACTTCGAATTATTCATCGTGATCTTAAAACTAGCAATGTCTTATTAGATGAGAATATGGATCCAAAAATTTCAGACTTTGGTTTGGCAAGGATCATACAAGTGGATCAAACTCAAGGAAATACTAATAGAATTGCTGGTACCTACGGTTACATGTCTCATGAATATGCAATGCATGGAAACTTCTCAACAAAATCTGATGTGTATAGTTATGGAGTCTTAGTCTTGGAGATCATTAGTGGACAGAGAAATAGCACATTTTATCTATCGTCAGATCTTACTCAAAACATCTTAAATTGCACTTGGGATCTATGGACAAATGGAACAGCACTAGAATTGTTGGACCCAAGTCTCAGAGACAATTGTTCGAGAGACGAGGTGCTTAGATGTATTCATATTGCTTTATTATGTGTTCAAGAGGATCCTGGTCGTAGACCATCCATGACATCCATTGTTCTTATGTTGAATAGTTATTCTATTCCTTTGCCTTCACCTAAGCGGCCAGCATTTTTACTTCGTAGTCCTAATAATAGCTCTGAAACAAATCATGGTCAACCTACGAATAGGCGCTCATCTTGGACAAACAATCAAATGTCTATATCTGAGCTGCAAGCACGATAA 1128 37.59 MKTKSKSMYNECINIMRSSHYFNVDTQLGDEMTIVESLQFDFNTVDVATNNFSVENKLGEGGFGAVYKGRLDNGQEIAVKRLSRRSLQGGEEFKNEVMVVAKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDGFLFDPQGQRELDWCGRYKIINGIARGILYLHEDSRLRIIHRDLKTSNVLLDENMDPKISDFGLARIIQVDQTQGNTNRIAGTYGYMSHEYAMHGNFSTKSDVYSYGVLVLEIISGQRNSTFYLSSDLTQNILNCTWDLWTNGTALELLDPSLRDNCSRDEVLRCIHIALLCVQEDPGRRPSMTSIVLMLNSYSIPLPSPKRPAFLLRSPNNSSETNHGQPTNRRSSWTNNQMSISELQAR 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10593317 10595060 - Sed0003462.1 Sed01g1443 700747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1443 375 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524(InterPro)
Sed01g1443 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1443 375 Pfam Domain of unknown function (DUF3403) 330 375 IPR021820 GO:0004674(InterPro)
Sed01g1443 375 CDD STKc_IRAK 58 325 - -
Sed01g1443 375 FunFam cysteine-rich receptor-like protein kinase 10 128 331 - -
Sed01g1443 375 Pfam Protein tyrosine and serine/threonine kinase 54 322 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1443 375 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 339 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Sed01g1443 375 SMART serkin_6 52 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1443 375 Gene3D Phosphorylase Kinase; domain 1 28 127 - -
Sed01g1443 375 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Sed01g1443 375 MobiDBLite consensus disorder prediction 340 375 - -
Sed01g1443 375 ProSiteProfiles Protein kinase domain profile. 52 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1443 375 Gene3D Transferase(Phosphotransferase) domain 1 128 330 - -
Sed01g1443 375 MobiDBLite consensus disorder prediction 338 375 - -
Sed01g1443 375 SUPERFAMILY Protein kinase-like (PK-like) 37 354 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1443 Sed-Chr1:10593317 Sed08g2336 Sed-Chr8:36723894 1.50E-138 dispersed
Sed01g1442 Sed-Chr1:10588685 Sed01g1443 Sed-Chr1:10593317 1.70E-185 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78610 PF07714 PK_Tyr_Ser-Thr 1.80E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1443 - - - 0.0