Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1446 ATGCTGAATTTTGGGAGTTTCCTCATCGTTATGATCCGTTTGTTAATCCATACCCATTCTGAAGAACTTCCGACGCCTTTCCGTCAATGCCTAACCGCGAATAACTTCAGCGCCGATAGCAGCTACGAGTCCAGCCTTAATGTCATGTTATCTAAACTCTCTACCAACGCCCCCGGAGCTAACGGATTCTTCAATTCCTCCGTGGGGCGAACACCGGACGACACCGTTTACGGGCTCTTCCAGTGCCGTGGAGACAGCACCAACAGCTCCTGCAGAAACTGCGTCATGGAGGCTACCAAAATGACAGCCCATGAGCTCTGTCCATTCAATAAAGGCGCTGTGGCTTGGTTGGACTACTGCACGTTGCGTTATTCGGACCAAAACTTCTTTTCCATGGTGTCCACCGAGCCGCGCATCAGCTTAGGAAATCACATTGACATAGAGGCCGTGGACGTGGCTGGGTTCAACCTGCTAGTGATGTCCACATTGAGGGACATGGCGGAGAAGGCCTCTTCGGCGGCCGTGGGGGGTCAAATGTTTGCAGCGCAGGATGTAGCTTTCGAGTCGAATAGAACGCTTTACGCGGTGGCACAGTGCACAGCCGACTTGTCGAATTCCAATTGCAAGGATTGTCTAACACAAGCTGTTACGGATATTCCGCATTGTTGCACTAATAAAGTTGGTGGCAGAATTTTGTTCCCTAGTTGTTACGTTCGTTACGAACTTTACCAGTTTTACAATCTCATCACCACCAATCCTCCAGCACCACCGCCATCTCCTTCAACAGGGAAAAATATCAGATCCTCGATTGTTGCCTCCATTCTGCTTTTGGCTCTTTGCTGGATGAGTTTTCTGCTTCGAAGAGCGAAGAAAAAATATCACATTACGGTTATGGAAAATATTATTAGTGAGATCACAGCCGAGGAATCTTTGCAATTTGATTTCCATACAATCGATGCTGCTACCAACAAATTCTCAGAGGAGAACAAGTTGGGTGAAGGTGGCTTTGGTGTAGTCTACAAGGGTAGGCTTGAAAATGGACAAGAAATAGCTGTGAAAAGATTATCAAGTGGATCTTCACAAGGTTCTGAAGAGTTCAAGAATGAGGTTGTGTTGGTTGCTATGCTTCAACATAGAAATCTAGTTAGGCTGTTGGGGTTCTGCTTGGAGGGTGGAGAAAAGATACTCATCTATGAATACATTCCCAACAAAAGCCTTGACTTTTTCCTATTTGATATCGAGGGGCAGAAAAGGTTAGATTGGTCGAGTCGGAATAAGATCATCAATGGGATTGCTCGGGGAATGCTGTATTTACATGAAGATTCCCGACTTCGAATTATTCATCGCGATCTTAAAGCTAGCAATGTTTTATTAGATGATGAAATGAATCCGAAGATTTCAGACTTTGGTTTGGCAAGAATTATTCAAATGGATGAAACTCAAAAAAATACATGTCGAATTGTTGGTACCTATGGTTACATGCCTCCTGAATATATAAAGCACGGAAACTTCTCTACTAAATCTGATGTATATAGCTTTGGAGTATTGATATTGGAGATTATGAGTGGAAAGAAAAACAACAACTTTTATCTATCCGGTTTGGCGGAAGACCTCTTGACCTATGCTTGGAAACTACGGAATGATGGTAGACCATTAGAATTATTAGACTTGAGTTTGAGAGACGGTTACTCAAGGAATACGGTTCTTAGATGTATCCATATTGCTTTACTTTGTGTTCAAGAGGATCCTGGATTAAGACCTTCCATGGCATCTATTGTTCTTATGTTAAATAGTTATACAGTCACTTTGTCAGAACCTAAAGAACCAGCATTCTTCATGGAAAGTAGAAATAATGACATTGCTATTGATGGTGATAATCAATCTACAAGTAAATCTGCCAATGAAGTATCTACAACTGAGTTGTATCCACGATGA 1935 42.89 MLNFGSFLIVMIRLLIHTHSEELPTPFRQCLTANNFSADSSYESSLNVMLSKLSTNAPGANGFFNSSVGRTPDDTVYGLFQCRGDSTNSSCRNCVMEATKMTAHELCPFNKGAVAWLDYCTLRYSDQNFFSMVSTEPRISLGNHIDIEAVDVAGFNLLVMSTLRDMAEKASSAAVGGQMFAAQDVAFESNRTLYAVAQCTADLSNSNCKDCLTQAVTDIPHCCTNKVGGRILFPSCYVRYELYQFYNLITTNPPAPPPSPSTGKNIRSSIVASILLLALCWMSFLLRRAKKKYHITVMENIISEITAEESLQFDFHTIDAATNKFSEENKLGEGGFGVVYKGRLENGQEIAVKRLSSGSSQGSEEFKNEVVLVAMLQHRNLVRLLGFCLEGGEKILIYEYIPNKSLDFFLFDIEGQKRLDWSSRNKIINGIARGMLYLHEDSRLRIIHRDLKASNVLLDDEMNPKISDFGLARIIQMDETQKNTCRIVGTYGYMPPEYIKHGNFSTKSDVYSFGVLILEIMSGKKNNNFYLSGLAEDLLTYAWKLRNDGRPLELLDLSLRDGYSRNTVLRCIHIALLCVQEDPGLRPSMASIVLMLNSYTVTLSEPKEPAFFMESRNNDIAIDGDNQSTSKSANEVSTTELYPR 644
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 10600534 10603783 - Sed0022806.1 Sed01g1446 700750
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1446 644 FunFam Cysteine-rich receptor-like protein kinase 10 140 245 - -
Sed01g1446 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1446 644 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 136 612 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Sed01g1446 644 Gene3D - 25 129 IPR038408 -
Sed01g1446 644 Gene3D - 147 245 IPR038408 -
Sed01g1446 644 Pfam Protein tyrosine and serine/threonine kinase 328 594 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1446 644 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524(InterPro)
Sed01g1446 644 FunFam Cysteine-rich receptor-like protein kinase 10 287 400 - -
Sed01g1446 644 ProSiteProfiles Gnk2-homologous domain profile. 24 129 IPR002902 -
Sed01g1446 644 Pfam Salt stress response/antifungal 30 127 IPR002902 -
Sed01g1446 644 Pfam Salt stress response/antifungal 163 242 IPR002902 -
Sed01g1446 644 FunFam cysteine-rich receptor-like protein kinase 10 401 603 - -
Sed01g1446 644 CDD STKc_IRAK 331 597 - -
Sed01g1446 644 SUPERFAMILY Protein kinase-like (PK-like) 311 621 IPR011009 -
Sed01g1446 644 ProSiteProfiles Protein kinase domain profile. 325 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1446 644 MobiDBLite consensus disorder prediction 622 644 - -
Sed01g1446 644 ProSiteProfiles Gnk2-homologous domain profile. 135 245 IPR002902 -
Sed01g1446 644 SMART serkin_6 325 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1446 644 Gene3D Phosphorylase Kinase; domain 1 287 400 - -
Sed01g1446 644 Gene3D Transferase(Phosphotransferase) domain 1 401 612 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1435 Sed-Chr1:10569950 Sed01g1446 Sed-Chr1:10600534 3.60E-10 dispersed
Sed01g1437 Sed-Chr1:10573747 Sed01g1446 Sed-Chr1:10600534 2.40E-216 dispersed
Sed01g1446 Sed-Chr1:10600534 Sed08g2336 Sed-Chr8:36723894 1.60E-233 dispersed
Sed01g1444 Sed-Chr1:10595340 Sed01g1446 Sed-Chr1:10600534 6.40E-37 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78611 PF07714 PK_Tyr_Ser-Thr 7.50E-50 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1446 - - - 0.0