Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1446 | ATGCTGAATTTTGGGAGTTTCCTCATCGTTATGATCCGTTTGTTAATCCATACCCATTCTGAAGAACTTCCGACGCCTTTCCGTCAATGCCTAACCGCGAATAACTTCAGCGCCGATAGCAGCTACGAGTCCAGCCTTAATGTCATGTTATCTAAACTCTCTACCAACGCCCCCGGAGCTAACGGATTCTTCAATTCCTCCGTGGGGCGAACACCGGACGACACCGTTTACGGGCTCTTCCAGTGCCGTGGAGACAGCACCAACAGCTCCTGCAGAAACTGCGTCATGGAGGCTACCAAAATGACAGCCCATGAGCTCTGTCCATTCAATAAAGGCGCTGTGGCTTGGTTGGACTACTGCACGTTGCGTTATTCGGACCAAAACTTCTTTTCCATGGTGTCCACCGAGCCGCGCATCAGCTTAGGAAATCACATTGACATAGAGGCCGTGGACGTGGCTGGGTTCAACCTGCTAGTGATGTCCACATTGAGGGACATGGCGGAGAAGGCCTCTTCGGCGGCCGTGGGGGGTCAAATGTTTGCAGCGCAGGATGTAGCTTTCGAGTCGAATAGAACGCTTTACGCGGTGGCACAGTGCACAGCCGACTTGTCGAATTCCAATTGCAAGGATTGTCTAACACAAGCTGTTACGGATATTCCGCATTGTTGCACTAATAAAGTTGGTGGCAGAATTTTGTTCCCTAGTTGTTACGTTCGTTACGAACTTTACCAGTTTTACAATCTCATCACCACCAATCCTCCAGCACCACCGCCATCTCCTTCAACAGGGAAAAATATCAGATCCTCGATTGTTGCCTCCATTCTGCTTTTGGCTCTTTGCTGGATGAGTTTTCTGCTTCGAAGAGCGAAGAAAAAATATCACATTACGGTTATGGAAAATATTATTAGTGAGATCACAGCCGAGGAATCTTTGCAATTTGATTTCCATACAATCGATGCTGCTACCAACAAATTCTCAGAGGAGAACAAGTTGGGTGAAGGTGGCTTTGGTGTAGTCTACAAGGGTAGGCTTGAAAATGGACAAGAAATAGCTGTGAAAAGATTATCAAGTGGATCTTCACAAGGTTCTGAAGAGTTCAAGAATGAGGTTGTGTTGGTTGCTATGCTTCAACATAGAAATCTAGTTAGGCTGTTGGGGTTCTGCTTGGAGGGTGGAGAAAAGATACTCATCTATGAATACATTCCCAACAAAAGCCTTGACTTTTTCCTATTTGATATCGAGGGGCAGAAAAGGTTAGATTGGTCGAGTCGGAATAAGATCATCAATGGGATTGCTCGGGGAATGCTGTATTTACATGAAGATTCCCGACTTCGAATTATTCATCGCGATCTTAAAGCTAGCAATGTTTTATTAGATGATGAAATGAATCCGAAGATTTCAGACTTTGGTTTGGCAAGAATTATTCAAATGGATGAAACTCAAAAAAATACATGTCGAATTGTTGGTACCTATGGTTACATGCCTCCTGAATATATAAAGCACGGAAACTTCTCTACTAAATCTGATGTATATAGCTTTGGAGTATTGATATTGGAGATTATGAGTGGAAAGAAAAACAACAACTTTTATCTATCCGGTTTGGCGGAAGACCTCTTGACCTATGCTTGGAAACTACGGAATGATGGTAGACCATTAGAATTATTAGACTTGAGTTTGAGAGACGGTTACTCAAGGAATACGGTTCTTAGATGTATCCATATTGCTTTACTTTGTGTTCAAGAGGATCCTGGATTAAGACCTTCCATGGCATCTATTGTTCTTATGTTAAATAGTTATACAGTCACTTTGTCAGAACCTAAAGAACCAGCATTCTTCATGGAAAGTAGAAATAATGACATTGCTATTGATGGTGATAATCAATCTACAAGTAAATCTGCCAATGAAGTATCTACAACTGAGTTGTATCCACGATGA | 1935 | 42.89 | MLNFGSFLIVMIRLLIHTHSEELPTPFRQCLTANNFSADSSYESSLNVMLSKLSTNAPGANGFFNSSVGRTPDDTVYGLFQCRGDSTNSSCRNCVMEATKMTAHELCPFNKGAVAWLDYCTLRYSDQNFFSMVSTEPRISLGNHIDIEAVDVAGFNLLVMSTLRDMAEKASSAAVGGQMFAAQDVAFESNRTLYAVAQCTADLSNSNCKDCLTQAVTDIPHCCTNKVGGRILFPSCYVRYELYQFYNLITTNPPAPPPSPSTGKNIRSSIVASILLLALCWMSFLLRRAKKKYHITVMENIISEITAEESLQFDFHTIDAATNKFSEENKLGEGGFGVVYKGRLENGQEIAVKRLSSGSSQGSEEFKNEVVLVAMLQHRNLVRLLGFCLEGGEKILIYEYIPNKSLDFFLFDIEGQKRLDWSSRNKIINGIARGMLYLHEDSRLRIIHRDLKASNVLLDDEMNPKISDFGLARIIQMDETQKNTCRIVGTYGYMPPEYIKHGNFSTKSDVYSFGVLILEIMSGKKNNNFYLSGLAEDLLTYAWKLRNDGRPLELLDLSLRDGYSRNTVLRCIHIALLCVQEDPGLRPSMASIVLMLNSYTVTLSEPKEPAFFMESRNNDIAIDGDNQSTSKSANEVSTTELYPR | 644 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10600534 | 10603783 | - | Sed0022806.1 | Sed01g1446 | 700750 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1446 | 644 | FunFam | Cysteine-rich receptor-like protein kinase 10 | 140 | 245 | - | - | |
Sed01g1446 | 644 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 446 | 458 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g1446 | 644 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 136 | 612 | - | GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER) | |
Sed01g1446 | 644 | Gene3D | - | 25 | 129 | IPR038408 | - | |
Sed01g1446 | 644 | Gene3D | - | 147 | 245 | IPR038408 | - | |
Sed01g1446 | 644 | Pfam | Protein tyrosine and serine/threonine kinase | 328 | 594 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g1446 | 644 | ProSitePatterns | Protein kinases ATP-binding region signature. | 331 | 353 | IPR017441 | GO:0005524(InterPro) | |
Sed01g1446 | 644 | FunFam | Cysteine-rich receptor-like protein kinase 10 | 287 | 400 | - | - | |
Sed01g1446 | 644 | ProSiteProfiles | Gnk2-homologous domain profile. | 24 | 129 | IPR002902 | - | |
Sed01g1446 | 644 | Pfam | Salt stress response/antifungal | 30 | 127 | IPR002902 | - | |
Sed01g1446 | 644 | Pfam | Salt stress response/antifungal | 163 | 242 | IPR002902 | - | |
Sed01g1446 | 644 | FunFam | cysteine-rich receptor-like protein kinase 10 | 401 | 603 | - | - | |
Sed01g1446 | 644 | CDD | STKc_IRAK | 331 | 597 | - | - | |
Sed01g1446 | 644 | SUPERFAMILY | Protein kinase-like (PK-like) | 311 | 621 | IPR011009 | - | |
Sed01g1446 | 644 | ProSiteProfiles | Protein kinase domain profile. | 325 | 600 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g1446 | 644 | MobiDBLite | consensus disorder prediction | 622 | 644 | - | - | |
Sed01g1446 | 644 | ProSiteProfiles | Gnk2-homologous domain profile. | 135 | 245 | IPR002902 | - | |
Sed01g1446 | 644 | SMART | serkin_6 | 325 | 600 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g1446 | 644 | Gene3D | Phosphorylase Kinase; domain 1 | 287 | 400 | - | - | |
Sed01g1446 | 644 | Gene3D | Transferase(Phosphotransferase) domain 1 | 401 | 612 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1435 | Sed-Chr1:10569950 | Sed01g1446 | Sed-Chr1:10600534 | 3.60E-10 | dispersed | |
Sed01g1437 | Sed-Chr1:10573747 | Sed01g1446 | Sed-Chr1:10600534 | 2.40E-216 | dispersed | |
Sed01g1446 | Sed-Chr1:10600534 | Sed08g2336 | Sed-Chr8:36723894 | 1.60E-233 | dispersed | |
Sed01g1444 | Sed-Chr1:10595340 | Sed01g1446 | Sed-Chr1:10600534 | 6.40E-37 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78611 | PF07714 | PK_Tyr_Ser-Thr | 7.50E-50 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1446 | - | - | - | 0.0 |