Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1457 ATGTTTGGAGCACGTGATTTTGAAGATCATCATCATCAGGATTTACTTCTGGAGATGACACAGAAAAATTTTGAAAATGAAATGGAAAAATTTGGAGAAGACGAGTTCGAGAGTAGGTCGGTGACCGACGCCATGGAAGGTCCTTTGGGAGAGGACCAAAATCATTTGAGTAATAAGAGGAAGCGTTATAATCGCCATACTCAGCTCCAAATCCAGGAGATGGAAGCGTTTTTTAAAGAGTGTCCGCACCCAGATGACAAGCAAAGAAAGCAGCTCAGCCGCGAGCTAGGGCTCGAACCCCTCCAAGTCAAGTTCTGGTTTCAAAACAAGCGAACCCAAATGAAGGCTCAACATGAACGGCACGAGAATGCAATATTGAAAGCACAAAACGAGAAACTAAGAACAGAAAACATGAGGTATAAGGAAGCTCTTAGCAATAGCAGCTGCCCCAATTGTGGAGGTCCCGCCGCTCTTGGTGAGATGTCCTTCGACGGCCAGCATTTGAGAATTGACAATGCACATTTAAGGGAAGAGATCGAGAGACTAAACGCCACAGTAGGAAGCAAATATGGTGGGAAGCCATGGGTGCCTAGTTCCCATTCTCATCATGTTCCATGTGGAGCCCTTGATGTAGGAGTTGGGAGATTAAAGGGGCAACCATCAGCAGATTTCTTAGGGGAAATGTATGGAGTTGGAGACAATGTGTTAAAGTCTGTGACAACCGAAATCGATAAACCAGTCATCATTGAGCTTGCAATGTCAGCCATGGAAGAAGTGTGCAGAATGGCTCAAGTAGGCGAACCCTTGTGGATTAGTAATGGTGAAAACTCCATGGAAGTGCTGAATGAAGAAGAATACTTGAGAACTTACTCTAGAGGAATTGGGCCTAGAATTTTGGGCCTAAGCTTTGAAGCTTCAAGGGAGTCATCCATTGTTGCCTTCAATCATTTGAAACTTGTCGATATTCTCATGGACGTGAATGAGTGGTCAGCCGTATTTTGCGGGATTGTGTCAAGAGCATTGACATTGGAAGTGTTATCAAGTGGAGTTGGCGGAAACCATAACGGAGCAATACAAGTGATGACGGCGGAGTTCCAGGTTGCTTCGCCTCTAGTCCCGACCCGAGAAAACTACATGGTGAGATACTGTAAGCAGCTGCCGGGGGAGGGGAGGTGGGCGGTGGCGGATGTTTCGCTCGACTATCTACGCCCGACTCCTATTTCATCCACGAGAAGAAGGCCTTCTGGTTGCTTAATCCAACAACTACCTAATGGTTTCTCTAAGGTTACATGGGTTGAACATGTTGAAGTGGATGATCGAGCCGTACACAATTTATACAAACGCCTAGTGAGTTGTGGGCTCGCTTTTGGAGCAAAACGATGGGTGGCTACATTGAATCGACAGTGCGAACGCCTTACAAACTCCTCGGCTGCTAACATTCCAGCAGTAGACATATGCGTGGTGACCGGGCAAGAGGGAAGGAAGAGCGTTATGAAGCTAGCTGAGAGAATGGTGAGAAGCTTCTGTAGCGGCGTTGGGGCTTCCTGTGCTCAGAATTGGACCACATTATCCGCCATCGGCTCTGACGACGTTCGAGTCATGGCTAGAAAGAGCCTCGATGACCCCGGAAGGCCTCCTGGTATTGTTCTTAACGCAGCTACTTCCTTCTGGATTCCAATTCCCCCCAACAGAGTCTTCCATTTCCTCCGGGATCAAAACACCCGCAGCCAGTGGGATATACTTTCAAACGGTGGGCTAGTCCAAGAAATGGCTCGCATAGGCAACGATTGCAACCAAGGAAACTGCGTCTCGTTGCTTCGCGTCAATAGTGCAAATTCAAGCCAAAGCAACATGCTAATACTACAAGAGAGTTGCAGCGACAGCACAGGTTGCTACATAATATACGCACCAGTGGACACCATCGCCATGAACATGGTGTTGAGTGGCGGAGACGCTGATTACGTTGCTCTGTTGCCGTCCGGCTTCGCCATACTCCCCGACGGGCCTAATGGGCCTGAGCCCAATGGACCATCTGGGCTTCTGGAATTCGGGTCGGGTGGTTCGTTGTTGACCGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACGGCAAAATTGTCTCTAGGATCCGTGGCTACGGTCAACAGCCTCATCAAGTGCACGGTGGAAAGGATTAGAGCTGCAGTGATGTGCGAGCATCCATGA 2205 48.21 MFGARDFEDHHHQDLLLEMTQKNFENEMEKFGEDEFESRSVTDAMEGPLGEDQNHLSNKRKRYNRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAQNEKLRTENMRYKEALSNSSCPNCGGPAALGEMSFDGQHLRIDNAHLREEIERLNATVGSKYGGKPWVPSSHSHHVPCGALDVGVGRLKGQPSADFLGEMYGVGDNVLKSVTTEIDKPVIIELAMSAMEEVCRMAQVGEPLWISNGENSMEVLNEEEYLRTYSRGIGPRILGLSFEASRESSIVAFNHLKLVDILMDVNEWSAVFCGIVSRALTLEVLSSGVGGNHNGAIQVMTAEFQVASPLVPTRENYMVRYCKQLPGEGRWAVADVSLDYLRPTPISSTRRRPSGCLIQQLPNGFSKVTWVEHVEVDDRAVHNLYKRLVSCGLAFGAKRWVATLNRQCERLTNSSAANIPAVDICVVTGQEGRKSVMKLAERMVRSFCSGVGASCAQNWTTLSAIGSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRSQWDILSNGGLVQEMARIGNDCNQGNCVSLLRVNSANSSQSNMLILQESCSDSTGCYIIYAPVDTIAMNMVLSGGDADYVALLPSGFAILPDGPNGPEPNGPSGLLEFGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAAVMCEHP 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10671656 10680666 + Sed0026681.1 Sed01g1457 700761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1457 734 FunFam Homeobox-leucine zipper protein HDG1 49 133 - -
Sed01g1457 734 Pfam Homeodomain 60 115 IPR001356 GO:0003677(InterPro)
Sed01g1457 734 Pfam START domain 251 471 IPR002913 GO:0008289(InterPro)
Sed01g1457 734 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed01g1457 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 731 IPR042160 -
Sed01g1457 734 SMART START_1 250 471 IPR002913 GO:0008289(InterPro)
Sed01g1457 734 SMART HOX_1 58 121 IPR001356 GO:0003677(InterPro)
Sed01g1457 734 ProSiteProfiles START domain profile. 241 474 IPR002913 GO:0008289(InterPro)
Sed01g1457 734 Coils Coil 111 143 - -
Sed01g1457 734 CDD homeodomain 59 118 IPR001356 GO:0003677(InterPro)
Sed01g1457 734 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Sed01g1457 734 FunFam Homeobox-leucine zipper protein GLABRA 2 250 470 - -
Sed01g1457 734 SUPERFAMILY Homeodomain-like 48 117 IPR009057 -
Sed01g1457 734 SUPERFAMILY Bet v1-like 241 472 - -
Sed01g1457 734 CDD START_ArGLABRA2_like 245 470 - -
Sed01g1457 734 MobiDBLite consensus disorder prediction 33 57 - -
Sed01g1457 734 SUPERFAMILY Bet v1-like 492 726 - -
Sed01g1457 734 Gene3D - 50 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1457 Sed-Chr1:10671656 Sed05g3070 Sed-Chr5:40988413 6.80E-268 dispersed
Sed01g1457 Sed-Chr1:10671656 Sed10g0620 Sed-Chr10:4136562 9.50E-270 wgd
Sed01g1457 Sed-Chr1:10671656 Sed14g1359 Sed-Chr14:22405122 3.10E-244 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37199 PF01852 START 1.00E-45 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1457 K09338 - csv:101212604 1167.91