Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1475 ATGGATTCTAAAACACTGTTTTTCTTCATCTTTCTTTCCTTTTTGGCTTCTCCTTCTGCTTTTGCACATGAAGATGAGCACAATGGCCTTGTTTTGAACTTTTACAAGGATACATGTCCTCAAGCTGAAGATATCGTCAAAGAACAAGTTAGGCTTCTCTATAAGCGCCACAAGAACACTGCATTCTCTTGGCTCAGAAACATTTTCCATGACTGTGCAGTTCAATCCTGTGATGCATCTCTGCTTCTGGATTCGACGAGACGGACGCTGTCCGAGAAGGAAACAGACAGGAGCTTTGGACTAAGGAACTTTAGGTACATTGAGACCATAAAAGAAGCAGTGGAGAGGGAGTGCCCTGGAGTTGTGTCCTGTGCTGATATTCTTGTTTTGTCTGCCAGAGATGGCATTGTTTCTCTTGGGGGGCCTTACATCCCACTTAAGACAGGCAGAAGAGATGGAAGGAGAAGCAGAGCTGAAGTGCTGGAAGAGTACCTTCCAGATCACAATGAGAGCATGTCTGTTGTCCTTGAAAGATTTGCAGCCATGGGTATTGACACCCCTGGATTGGTTGCTTTACTAGGAGCTCATAGTGTTGGTAGAACACACTGTGTGAAGCTGGTGCACCGGCTGTACCCGCAGGTAGACCCTGCCCTGAACCCTGGTCACGTAGAGCACATGCTGTACAAGTGCCCTGATGAGATCCCAGACCCCAAGGCTGTACAGTACGTGAGGAACGACCGCGGCACGCCCATGATTCTGGACAACAACTACTACAGAAACATACTTGACAACAAGGGGTTGCTGATAGTAGATCACCAACTAGCCACAGACAAGAGAACAAAGCCATACGTGAAGAAAATGGCCAAAAAGCAAGACTATTTCTTCAAGGAATTCTCAAGAGCCATAACCATCCTTTCTGAGAACAACCCTCTCACTGGCACAAAGGGTGAGATCAGGAAGCAGTGCACTGTTGCCAACAAGCTGCACTGA 990 46.97 MDSKTLFFFIFLSFLASPSAFAHEDEHNGLVLNFYKDTCPQAEDIVKEQVRLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRTLSEKETDRSFGLRNFRYIETIKEAVERECPGVVSCADILVLSARDGIVSLGGPYIPLKTGRRDGRRSRAEVLEEYLPDHNESMSVVLERFAAMGIDTPGLVALLGAHSVGRTHCVKLVHRLYPQVDPALNPGHVEHMLYKCPDEIPDPKAVQYVRNDRGTPMILDNNYYRNILDNKGLLIVDHQLATDKRTKPYVKKMAKKQDYFFKEFSRAITILSENNPLTGTKGEIRKQCTVANKLH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10784384 10786792 - Sed0000484.1 Sed01g1475 700779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1475 329 FunFam Peroxidase 166 305 - -
Sed01g1475 329 CDD secretory_peroxidase 29 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g1475 329 Pfam Peroxidase 46 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 Gene3D Peroxidase, domain 2 166 305 - -
Sed01g1475 329 ProSiteProfiles Plant heme peroxidase family profile. 29 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 Gene3D - 33 326 - -
Sed01g1475 329 PANTHER - 16 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 SUPERFAMILY Heme-dependent peroxidases 30 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1475 329 FunFam Peroxidase 33 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1475 Sed-Chr1:10784384 Sed04g1342 Sed-Chr4:27745121 5.00E-101 dispersed
Sed01g1475 Sed-Chr1:10784384 Sed08g2365 Sed-Chr8:36911627 6.60E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1475 K00430 - csv:101214168 603.208