Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1477 ATGTCTTGCTCAAATCTCACCATGTGGGTGTCTTCCAAACTCGCCGTTTCTGATTCCTCCTCCCTTTCCTTCAGCTCTTTTCTCAGCCCTTTTCACCTCCCTTCCCAGACCTGCCCTGCCCGATCGCTGTCGGTTTCGCCGATCCAATGCAGTCTTCGGGATCTCCGAGACCGCATTGATTCGGTGAAGAACACCCAGAAGATTACTGAGGCAATGAAGCTGGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTGGTCAATGGCAGACCCTTCTCAGAAGCATTGGTTGAGGTCCTTTACAACATCAATGAGCAGCTTCAAACCGAAGATGTTGATGTTCCTCTAACCAAGGTTAGACCTGTCAAGAAAGTTGCATTGGTTGTTGTCACTGGCGACCGTGGTCTTTGTGGTGGTTTCAACAATTACATTATCAAGAAAGCTGAAGCTAGAATCAGGGATTTGAAGGAATTGGGCCTTGAGTATACAGTTATTAGCGTTGGCAAAAAAGGTAATTCTTATTTTCTTCGCCGGCCTTATATTCCTGTGGATAAGTTCCTTGAAGGTGGCAGTCTCCCTACTGCTAAAGAAGCTCAAGCCATTGCGGATGATGTTTTTTCACTGTTTATTAGTGAGGAAGTTGATAAAGTTGAGCTTTTGTACACCAAGTTTGTGTCTTTGGTTAAATCTGATCCTGTAATTCATACCCTTCTTCCTTTATCACCAAAGGGAGAGATTTGTGATATAAATGGAATCTGTGTGGATGCTGCTGAGGATGAGTTTTTCAGGTTGACTACAAAGGAAGGGAAATTGACTGTTGAAAGGGATTCAGTGAGGACAAGCACATCTGATTTCTCACCAATTTTGGAGTTTGAGCAGGACCCAGTTCAGATTTTGGATGCTTTGTTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAAGAGTCACTGGCTAGTGAACTTGCTGCTAGAATGAGTGCAATGAGCAATGCATCCGATAATGCTTCCGAGCTGAAGAAAACTCTGTCGATTGTGTACAACAGACGGCGCCAAGCTAAGATCACTGGTGAAATATTGGAGATTGTTGCTGGTGCTAATGCCTTGTCTTAA 1119 44.68 MSCSNLTMWVSSKLAVSDSSSLSFSSFLSPFHLPSQTCPARSLSVSPIQCSLRDLRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNYIIKKAEARIRDLKELGLEYTVISVGKKGNSYFLRRPYIPVDKFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGICVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNASDNASELKKTLSIVYNRRRQAKITGEILEIVAGANALS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10793122 10794744 + Sed0006102.1 Sed01g1477 700781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1477 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 371 - -
Sed01g1477 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 118 - -
Sed01g1477 372 Pfam ATP synthase 51 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed01g1477 372 PRINTS ATP synthase gamma subunit signature 123 142 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed01g1477 372 PRINTS ATP synthase gamma subunit signature 349 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed01g1477 372 PRINTS ATP synthase gamma subunit signature 216 233 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed01g1477 372 PRINTS ATP synthase gamma subunit signature 318 337 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed01g1477 372 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 51 371 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed01g1477 372 Gene3D - 119 242 - -
Sed01g1477 372 Hamap ATP synthase gamma chain [atpG]. 49 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed01g1477 372 PANTHER ATP SYNTHASE GAMMA CHAIN 1 371 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Sed01g1477 372 NCBIfam ATP synthase F1 subunit gamma 51 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed01g1477 372 FunFam ATP synthase gamma chain, chloroplastic 268 371 - -
Sed01g1477 372 ProSitePatterns ATP synthase gamma subunit signature. 357 370 IPR023632 -
Sed01g1477 372 FunFam ATP synthase gamma chain, chloroplastic 50 117 - -
Sed01g1477 372 CDD F1-ATPase_gamma 51 368 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed01g1477 372 FunFam ATP synthase gamma chain, chloroplastic 119 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1477 Sed-Chr1:10793122 Sed01g2299 Sed-Chr1:17382831 1.50E-16 dispersed
Sed01g1477 Sed-Chr1:10793122 Sed10g0607 Sed-Chr10:4019792 1.90E-141 wgd
Sed01g1477 Sed-Chr1:10793122 Sed08g2366 Sed-Chr8:36924135 1.50E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1477 K02115 - csv:101214408 620.157