Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1503 ATGGCTTCCACTAATTCCCACCTTCTCACTCTTATCATCATTCTCTCATTCATCAACTCCTCCCTCCAAGACTACTACACCCCACCAAAGAAAAACATGAACGCAATCGACTCGTGCTGGCGCGCAAGCTCCAATTGGGCCAAGAATCGCCAAGCCCTAGCCAACTGCGCGGTGGGGTATGGCAAGGACGCAATCGGTGGAAAATTCGGCACCATTTACGTCGTCACCGACCCCTCAGACAACCCTTCATCCCCCAAGTTTGGAACTTTGCGTTACGGGGTGATTCAAAGCAAGCCACTGTGGATCACGTTTGCCAGGGACATGGTGATCGTGCTGAAGAACGAGCTGATGATAAACAGTTTCAAGACGATCGATGGGCGGGGAGCGAAGGTAGAGATTGCTTACGGGCCTTGCATTACGGTTCAAGGAGTGAGCCATGTTATTATTCATGGGATTAGTATTCATGATTGTAAGCCTGGAAAAGCTGGGCTTGTTAGAGACACTGTGTCGCATGTTGGCAAACGTAAAGGATGTGACGGTGATGCTATTTCTATATTTGCTTCTTCGCATGTTTGGATTGACCATTGCTTTTTGGCTCGGTCTAGTGATGGTCTTATTGATGTCATTCATGCTTCCACTTCTGTCACTATCTCCAATAACTACTTCTCCCAACATGATAAAGTGATGCTTCTTGGACATAATGATGGGTTCACTGATGATAAGATTATGAGGGTGACCATCGTCTTCAATCGCTTCGGTGCGGGTCTCATTGAAAGGATGCCGAGGGTTAGGTTTGGGTATGCCCATGTTGCCAACAATAGATATGATGAGTGGAAGATGTATGCCATTGGTGGAAGTGCAAATCCTACAATCTTCAGTGAAGGAAACTACTTTGTTGCTCCCCAAAATTCTAACGCCAAGCAGGTTACAAAGAGGGAGGTGAACAATGGGTGGAAGGATTGGAAGTGGAGATCCTCAAGAGATGTGTTCTTAAATGGTGCATATTTTGTTCAATCTGGATGGGGAAGTTGCAGCCCATTTTACACAAGAGCTCAATCTTTTCCAGTGGCTCCAGGCTCTATGGTTCCAGCTTTGACTGCAAATGCAGGCCCACTTCGTTGTTCTATTGGCAAACCTTGCTAA 1143 46.54 MASTNSHLLTLIIILSFINSSLQDYYTPPKKNMNAIDSCWRASSNWAKNRQALANCAVGYGKDAIGGKFGTIYVVTDPSDNPSSPKFGTLRYGVIQSKPLWITFARDMVIVLKNELMINSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKAGLVRDTVSHVGKRKGCDGDAISIFASSHVWIDHCFLARSSDGLIDVIHASTSVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPQNSNAKQVTKREVNNGWKDWKWRSSRDVFLNGAYFVQSGWGSCSPFYTRAQSFPVAPGSMVPALTANAGPLRCSIGKPC 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10901077 10902987 - Sed0012517.1 Sed01g1503 700807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1503 380 PANTHER PECTATE LYASE 18-RELATED 31 377 IPR045032 GO:0030570(InterPro)
Sed01g1503 380 SMART amb_all 107 304 IPR002022 -
Sed01g1503 380 Pfam Pectate lyase 114 298 IPR002022 -
Sed01g1503 380 Gene3D - 33 373 IPR012334 -
Sed01g1503 380 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Sed01g1503 380 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Sed01g1503 380 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Sed01g1503 380 PRINTS Pollen allergen Amb family signature 351 374 IPR018082 -
Sed01g1503 380 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Sed01g1503 380 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Sed01g1503 380 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Sed01g1503 380 PRINTS Pollen allergen Amb family signature 321 345 IPR018082 -
Sed01g1503 380 SUPERFAMILY Pectin lyase-like 33 371 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1503 Sed-Chr1:10901077 Sed04g0011 Sed-Chr4:77612 3.20E-120 dispersed
Sed01g1503 Sed-Chr1:10901077 Sed10g0588 Sed-Chr10:3888184 8.40E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1503 K01728 - csv:101211379 710.294