Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1523 ATGACTTCGAGAGTGGAAATCGATGAGGATTCTGATACAAAGGGAAGTATGTGGGATTTGGACCAGAAGCTCGATCAGCCAATGGATGAAGAAGCTGGTAGGCTTAGTAATATGTACAAAGAGAAGAAATTCTCGGGATTGTTGCTTCTTCGACTTGCATATCAAAGCCTTGGAGTGGTTTACGGAGATTTGGGGACTTCTCCCCTGTACGTTTTTTACAATACTTTTCCTCGTGGAATTTCTGATCCGGAGGATGTAGTTGGAGCACTTTCATTGATTATATACTCTCTCACACTAATTCCACTCATGAAGTATGTGTTTATCGTGTGTAAAGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTCTACTCCTTGCTTTGTCGTCACGCAAAAGTAAAAACTATTCCAAACCAGCACCGAACGGATGAGGATTTAACAACATATAGCCGCTCTAAATTTCATGAGCAATCATTTGCTGCTAAAACTAAAGCATGGCTTGAAAGAGGATCGCCCAAAAAAAATATATTGCTCATTCTTGTCCTCGTTGGCACTTCTATGGTAGTTGGAGATGGAATTCTCACTCCTGCAATATCGGTTTTATCTGCTGCGGGAGGGATCAAAGTAAACCAACCCCATGTGAGCAGTGGTGTAGTTGTGCTTGTTGCTGTTGTAATACTTGTAGGATTATTCAGCTTGCAACGTTATGGTACTGATAGAGTTAGTTGGCTCTTTGCTCCAGTTGTGCTACTTTGGTTTCTAGTAATTGGAGGTATAGGCATGTTCAACATCTTGAAATATGATAAAACCATTCTAAGAGCCTTTTCACCTGTGTATATTTATCGCTATTTTAGAAGGCGAGGGATGGATGGTTGGACGTCCCTCGGAGGTGTTCTGCTGAGTATAACAGGCACAGAGGCTCTATTTGCCGATCTAGCTCATTTTCGTGTAGCAGCTATACAGATTGCTTTTACAGTAGTTGTTTTTCCTTGCCTTCTCTTGGCATATTCTGGACAGGCTGCTTATCTTATGACCAATATGGAGCACGTGAGTGATGTCTTCTATCGTTCAATCCCAGATTCCATATATTGGCCTGTGTTTCTTGTTGCAACTGCTGCCGCTATAGTTGCTAGTCAAGCCACTATATCTGCAACATTTTCAATAATCAAGCAGGCTCATGCGCATGGCTGTTTTCCGAGGGTTAAAGTTGTCCATACGTCGAAGAACTTTCTCGGTCAGATATACGTTCCAGATATCAACTGGATCCTCATGCTTCTTTGCATTGCTGTGACAGCAGGATTTAAGAATCAAAGTCAAATTGGAAATGCTTATGGGACAGCGGTGGTTGTAGTCATGCTTGTGACCACACTGCTTATGATTCTAATCATGATCTTGGTGTGGCGCTGTCATTGGGTCATTGCCCTGATTTTCACCACACTGTCACTAATGGTGGAGTGCAGTTACTTTTCTGCTGTTCTCTTCAAGGTTGATCAAGGTGGCTGGGTCCCCCTTGTGATTGCTGCAGCTTTTCTTATCGTCATGTATGTGTGGCATTATGGTACTGTTAAACGATACGAATTCGAACTCCATAGTAAAGTCTCAATGGCGTGGGTTCTCGGACTTGGTCCCAGTCTAGGACTAGTCCGCGTTCCTGGGATTGGACTTGTGTATACCGAGCTTGCAAGCGGCGTACCTCACATATTTTCCCATTTCATTACGAATTTGCCTGCCATCCACTCTGTTGTTGTGTTTGTCTGTGTGAAATACCTTCCAGTCTACACAGTGCCAGAGGAAGAAAGGTTCTTGGTAAAGCGGATAGGACCCAAGAATTTTCACATGTTTCGTTGTGTTGCGAGATACGGTTATAAAGACCTCCACAAAAAGGATGATGATTTTGAGAAAAAGCTTTTCGATAGTATCTTCCTCTTTGTCAGGCTTGAGTCCATGATGGAAGGTTGTTCGGACTCCGATGAGTACAGTTTGTATGGCCAGCAAACTGAGCATTCAAGGGATGGCCTGTTGATTGGTAATGGCAACACAAATTTATCTAATGTGGACATGACATTCTCGTCCGTCGACTCAATCGTGCCCGTTAGATCTCCGGTGCGTTCAAATAACACACTAAGATTATCTGAGCAAGCAAGCAACCATACGGATAGCGACGAGATTGAATTCTTGATTAGGTGTAGAGATGCTGGGGTGGTGCACATATTGGGGAACACTGTAATTAGGGCAAGAAGGGAATCAAAATTCTATAAGAAGATAGCTGTTGATTATGTATATGCGTTTCTTAGGAAGATTTGCAGGCAGAACAGTGTGATTTTCAATGTTCCTCATGAGAGTCTATTAAATGTTGGGCAAATTTTCTATGTATAG 2376 42.59 MTSRVEIDEDSDTKGSMWDLDQKLDQPMDEEAGRLSNMYKEKKFSGLLLLRLAYQSLGVVYGDLGTSPLYVFYNTFPRGISDPEDVVGALSLIIYSLTLIPLMKYVFIVCKANDNGQGGTFALYSLLCRHAKVKTIPNQHRTDEDLTTYSRSKFHEQSFAAKTKAWLERGSPKKNILLILVLVGTSMVVGDGILTPAISVLSAAGGIKVNQPHVSSGVVVLVAVVILVGLFSLQRYGTDRVSWLFAPVVLLWFLVIGGIGMFNILKYDKTILRAFSPVYIYRYFRRRGMDGWTSLGGVLLSITGTEALFADLAHFRVAAIQIAFTVVVFPCLLLAYSGQAAYLMTNMEHVSDVFYRSIPDSIYWPVFLVATAAAIVASQATISATFSIIKQAHAHGCFPRVKVVHTSKNFLGQIYVPDINWILMLLCIAVTAGFKNQSQIGNAYGTAVVVVMLVTTLLMILIMILVWRCHWVIALIFTTLSLMVECSYFSAVLFKVDQGGWVPLVIAAAFLIVMYVWHYGTVKRYEFELHSKVSMAWVLGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDDDFEKKLFDSIFLFVRLESMMEGCSDSDEYSLYGQQTEHSRDGLLIGNGNTNLSNVDMTFSSVDSIVPVRSPVRSNNTLRLSEQASNHTDSDEIEFLIRCRDAGVVHILGNTVIRARRESKFYKKIAVDYVYAFLRKICRQNSVIFNVPHESLLNVGQIFYV 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11011007 11018671 + Sed0002203.1 Sed01g1523 700827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1523 791 Pfam K+ potassium transporter C-terminal domain 551 788 IPR053952 -
Sed01g1523 791 Pfam K+ potassium transporter integral membrane domain 52 537 IPR053951 -
Sed01g1523 791 NCBIfam potassium uptake protein 52 790 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed01g1523 791 MobiDBLite consensus disorder prediction 1 20 - -
Sed01g1523 791 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 45 790 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1523 Sed-Chr1:11011007 Sed08g2386 Sed-Chr8:37046425 0.00E+00 dispersed
Sed01g1523 Sed-Chr1:11011007 Sed01g1524 Sed-Chr1:11011007 0.00E+00 tandem
Sed01g1523 Sed-Chr1:11011007 Sed08g2385 Sed-Chr8:37045473 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1523 K03549 - csv:101217915 1416.36