Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1534 ATGAAAGCAGGTGAGTTGTTGTCTGTTCTTGTCCTCATTCTGGCCATTGCCGTCGTGTCGTCGGCCGAGCCTTACGGCGAAGAACACTCGAGCTTTGATGTCCCGCAGCTGCCGGAGTTTTCAGATTTAGATGACTTTCTCTCTTATGGGTTCTACCGGAAAAGTTGTCCCGGCGTCGACGGCATCATTCACCGGAAACTCAAGCAGTGGTATGATAAAGACAACACTATCGCCGCCAGCATCTTGAGACTCCACTTCCATGACTGCGTTGTTAGGGGGTGCGACGGTTCGATTCTTTTGGATTACGAGGGAAGCGAGAGGAGGGCTCCGGCGAGCAAGACGCTTAGGGGTTTCGAAGTGATCGATGATATCAAAGCCGAGATAGAGAAAAAGTGTCCTAAAACTGTTTCTTGCGCGGATATTCTCACTGCGGCTGCCAGAGATGCCACCGTACTCGTCGGCGGCCCATATTGGATGGTCCCCTATGGAAGAAGAGACGGAGTGGATTCCTATGGAAAAGAAACTGAATTGGTTCCAATGGGTTTTGAAGACGTCACTAATCTCATTGAACTCTACCAATCTCTCGGCTTGAATCTTGTTGACTTGGTTGTTCTTTCAGGCGCACACACAATCGGACAGGCAACATGTGGGTCGGTACAGAACAGGCTATACAACTACAGCGGAACGGGGAAACCGGACCCATCACTGAGCCCATCATACCTAAACTTCTTGAAAAGAAAATGCCGATGGGCCTCGGACTACGTGGAGCTTGACGCTACAACGCCCAAGGAATTCGACAACGCCTACTACACTAACCTCCCCAAAAAGATGGGTCTATTGTCCACTGATTCGGCTCTGTACAGCGACCCCAGAACTTCGCCCATCGTCAAAGCCATGGCCTATCAGCCCTCCCTTTTCCGCCACCAGTTTGCTGTGTCCATGGCTAAGCTTGGGAATGCTCAGGTTCTTACTGACCTTTTTGACGGCCAGATTCGAACCAAGTGCAGTTGTAGGAATTCTTCTTGA 1026 50.49 MKAGELLSVLVLILAIAVVSSAEPYGEEHSSFDVPQLPEFSDLDDFLSYGFYRKSCPGVDGIIHRKLKQWYDKDNTIAASILRLHFHDCVVRGCDGSILLDYEGSERRAPASKTLRGFEVIDDIKAEIEKKCPKTVSCADILTAAARDATVLVGGPYWMVPYGRRDGVDSYGKETELVPMGFEDVTNLIELYQSLGLNLVDLVVLSGAHTIGQATCGSVQNRLYNYSGTGKPDPSLSPSYLNFLKRKCRWASDYVELDATTPKEFDNAYYTNLPKKMGLLSTDSALYSDPRTSPIVKAMAYQPSLFRHQFAVSMAKLGNAQVLTDLFDGQIRTKCSCRNSS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11094649 11097597 - Sed0003048.1 Sed01g1534 700838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1534 341 Gene3D - 50 339 - -
Sed01g1534 341 PRINTS Plant peroxidase signature 256 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Plant peroxidase signature 312 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Plant peroxidase signature 116 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Plant peroxidase signature 200 212 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Plant peroxidase signature 56 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Plant peroxidase signature 80 100 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Plant peroxidase signature 135 145 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Plant peroxidase signature 272 289 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Plant peroxidase signature 154 169 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 SUPERFAMILY Heme-dependent peroxidases 47 339 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 CDD secretory_peroxidase 47 336 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g1534 341 ProSitePatterns Peroxidases active site signature. 78 89 IPR019794 GO:0004601(InterPro)
Sed01g1534 341 ProSitePatterns Peroxidases proximal heme-ligand signature. 201 211 IPR019793 -
Sed01g1534 341 PANTHER PEROXIDASE 25-RELATED 29 335 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed01g1534 341 ProSiteProfiles Plant heme peroxidase family profile. 46 339 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 FunFam Peroxidase 50 190 - -
Sed01g1534 341 Pfam Peroxidase 65 300 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 Gene3D Peroxidase, domain 2 179 317 - -
Sed01g1534 341 FunFam Peroxidase 179 317 - -
Sed01g1534 341 PRINTS Haem peroxidase superfamily signature 136 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Haem peroxidase superfamily signature 78 92 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Haem peroxidase superfamily signature 154 166 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Haem peroxidase superfamily signature 201 216 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g1534 341 PRINTS Haem peroxidase superfamily signature 258 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0775 Sed-Chr1:5786803 Sed01g1534 Sed-Chr1:11094649 4.50E-103 dispersed
Sed01g1534 Sed-Chr1:11094649 Sed10g0374 Sed-Chr10:2256507 3.20E-66 dispersed
Sed01g1534 Sed-Chr1:11094649 Sed14g0821 Sed-Chr14:15904860 1.80E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1534 K00430 - csv:101208042 569.311