Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1547 ATGGGCTGCGTTCTTGGCAAACTAGCCGCCGGCGATCGCCCGACCGCATCGGAACCTCCCCGTCGCCGCCGCAGCACCGATCACCACTCTCGTGCTGACCGAGTTAAGGATCAGACGACATCGGAGAAAAAGCAGGAAGTTCAGCAGGACGTGGATTCCTTGTCTGTAGAGCGCCGGAGACCTTCGCCGGGATTTTCCGTAAGGAATGAGCAAGGCTGGCCGTCGTGGCTGCTGGCCGTCGCCGGCGAGGTGATTCAAGGCTGGACGCCTCGACGAGCCAATACATTTGAGAAGCTTGCTAAGATAGGGCAAGGAACGTATAGTAATGTGTACAAGGCGAGGGATCTTATTACTGGTAAAATTGTTGCGCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGATTCATGGCCAGAGAGATTTTGGTTCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTCGAAGGCTTAGTTACTTCAAGAATGTCGTGTAGTCTTTACTTAGTGTTCGAGTATATGGAACACGACCTCGCCGGACTTGCCGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTAAAATGCTATATGAAACAGCTATTGTCCGGGCTTGAGCACTGTCACAATCGAGGTGTTTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGGATACTGAAGATAGCTGATTTTGGGTTGGCTACTTTTTTTGATCCTGGGCAGAAGCAACATATGACTAGTCGAGTAGTAACCCTTTGGTACCGCCCGCCTGAACTGTTGCTCGGAGCTACACTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTTGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAGCAACTCCATAAGATATTTAAATTATGTGGTTCTCCAACTGCGGATTACTGGAAGAAATACAAATTGCCCAATGCAACGCTTTTTAAACCCCAACAACCATACAAGCGGTGCATTGCGGAAACGTTCAAGGATTTTCCATCTTCTTCTCTACCTCTGATTGAATCTCTTCTTACAATGGACCCTGATGCACGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTACTACCGAGCCTCTTGCTTGTGAACCATCAAGTCTGCCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCTAAGAGGTCTAAATGGAAAAGCAACAGCTGTTGATGGGGGTGGAAGGAGAGTACGAGTACGCGATCGGGTTAGTCGGGCTGTCCCAGCACCTGAAGCTAACGCAGAGATACAATCAAACTTAGATAGGTGGAGAAAAGGGACAAAAGCAAATGGTAAGAGCAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACACGAGACATCTGAGAGGGGTTATTTATCATTTGGCGCAGCTGATGCTTCATTCAATTCCTCCTTCTTTAGTTCAAAGTCTGGATCAGTTAAAAGTGCAGGAGCTCCTGGGGGACCTTCTCGGAGGAAGAAAGCCGAAAGCGATAACACTTTGGTATCTTCGTCTCGAAAGTTCGTCCGTGCACTGAAGCCATCAATTGGGTTATCAATGGATCTATTGTTTAGAGGTAAATAA 1692 48.35 MGCVLGKLAAGDRPTASEPPRRRRSTDHHSRADRVKDQTTSEKKQEVQQDVDSLSVERRRPSPGFSVRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPGQKQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTADYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLTMDPDARGTATAALNSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRLRGLNGKATAVDGGGRRVRVRDRVSRAVPAPEANAEIQSNLDRWRKGTKANGKSKSKSEKFPPPHQDGAVGYPPHETSERGYLSFGAADASFNSSFFSSKSGSVKSAGAPGGPSRRKKAESDNTLVSSSRKFVRALKPSIGLSMDLLFRGK 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11185214 11189145 + Sed0024028.1 Sed01g1547 700851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1547 563 Gene3D Transferase(Phosphotransferase) domain 1 179 417 - -
Sed01g1547 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1547 563 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524(InterPro)
Sed01g1547 563 SMART serkin_6 96 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1547 563 MobiDBLite consensus disorder prediction 16 57 - -
Sed01g1547 563 SUPERFAMILY Protein kinase-like (PK-like) 89 385 IPR011009 -
Sed01g1547 563 CDD STKc_CDK9_like 96 380 - -
Sed01g1547 563 MobiDBLite consensus disorder prediction 454 474 - -
Sed01g1547 563 FunFam probable serine/threonine-protein kinase At1g54610 179 420 - -
Sed01g1547 563 Gene3D Phosphorylase Kinase; domain 1 83 178 - -
Sed01g1547 563 Pfam Protein kinase domain 96 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1547 563 FunFam probable serine/threonine-protein kinase At1g54610 83 178 - -
Sed01g1547 563 ProSiteProfiles Protein kinase domain profile. 96 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1547 563 MobiDBLite consensus disorder prediction 434 489 - -
Sed01g1547 563 PANTHER CELL DIVISION PROTEIN KINASE 95 380 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed01g1547 563 MobiDBLite consensus disorder prediction 509 540 - -
Sed01g1547 563 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1547 Sed-Chr1:11185214 Sed12g0863 Sed-Chr12:5354875 5.40E-196 dispersed
Sed10g1711 Sed-Chr10:34113851 Sed01g1547 Sed-Chr1:11185214 8.50E-93 transposed
Sed01g1547 Sed-Chr1:11185214 Sed08g2416 Sed-Chr8:37239123 7.60E-259 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78612 PF00069 Pkinase 7.50E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1547 K08819 - csv:101205716 932.939