Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1561 ATGAATTCTCGGGAGGCTGCACTGGTCTCCACTGCCGCCGCCGTTTTGGGTGCCTTCGCTTCGGCTGTTGCTTGTCGTTTCTTCTTCTTCAATCCCAAAAGGCAACGTCCACAGTTCGATCTGTCGACAAATGATGCTCTCTTCAACAACGGAGGGCATTCACATTGCCCTTTTGATCCTTCCAAACGCAAAGGGTGTTTGTCATGGGATGACTATTTCATGGCCATTGCATTCCTGTCGGCGGAAAGATCCAAGGATCCCAATCGGCAGGTTGGTGCATGCCTGGTTAGTCAAAACGGGGTGATTCTCGGCATAGGATATAATGGATTTCCAAGAGGATGCTCGGATGACAAGCTTCCTTGGGCAAAGAAATCAAAAACCAGCAATCCCTTGGAGACTAAGTATCCTTATGTTTGTCATGCTGAAGTCAATGCCATTTTAAATACAAATCATGCTTCAGCTAGTGGACAGAGGCTCTATGTGACCATGTTCCCTTGTAACGAATGTGCAAAAGTAATCATTCAGTCTGGCGTCTCTGAAGTTGTTTATTTTATTGAGAAGAGGATGAACAATTCCGTTGCATATGTTGCTTCCCACAAATTGCTAGCAATGGCTGGTGTAAAAGTTAGAAAACATCAACCCCTGTTGAGTCAGATCTTGATCAAGTTCGAGGATTCTCGTACATGA 687 45.27 MNSREAALVSTAAAVLGAFASAVACRFFFFNPKRQRPQFDLSTNDALFNNGGHSHCPFDPSKRKGCLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSKTSNPLETKYPYVCHAEVNAILNTNHASASGQRLYVTMFPCNECAKVIIQSGVSEVVYFIEKRMNNSVAYVASHKLLAMAGVKVRKHQPLLSQILIKFEDSRT 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11324234 11342034 + Sed0017169.1 Sed01g1561 700865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1561 228 Gene3D Cytidine Deaminase, domain 2 60 228 - -
Sed01g1561 228 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 140 173 IPR016192 GO:0008270(InterPro)|GO:0016787(InterPro)
Sed01g1561 228 PANTHER DEOXYCYTIDYLATE DEAMINASE-RELATED 50 226 IPR015517 -
Sed01g1561 228 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Sed01g1561 228 CDD deoxycytidylate_deaminase 70 194 IPR035105 -
Sed01g1561 228 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 68 209 IPR002125 -
Sed01g1561 228 FunFam Deoxycytidylate deaminase 59 228 - -
Sed01g1561 228 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 68 184 IPR002125 -
Sed01g1561 228 SUPERFAMILY Cytidine deaminase-like 70 220 IPR016193 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1561 K01493 - - csv:101203823 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1561 Sed-Chr1:11324234 Sed01g1562 Sed-Chr1:11324234 2.40E-131 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g107 . . . . Bpe12g00481 . . . . Cmo18g00220 . . . . . . . . . . . . . . . . . . . . . Cone2ag0977 . . . Lsi02g00505 Csa01g00966 Chy12g01167 Cme12g01589 . . . . . . . . Sed01g1561 . . . Cma18g00316 . Car18g00231 Cpe09g00959 . Bhi08g01489 Tan05g2966 Cmetu12g0290 Lac10g0585 Hepe07g2111 . . Cla03g00355 Cam03g0374 Cec03g0361 Cco03g0377 Clacu03g0373 Cmu03g0979 Cre03g0671 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010222 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 32