Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1563 ATGGCGACGACCACCAGTATTGGCGGCGGCGGCGGCGGTGGCGGTGGGGAAGACAGAGTTATGGCTACTGCTCAACAGATAGTCAATAGCCTCAACACTCCTAAGGAAGTTCGTGACGATATGCTCATGATCTTGTCCAGTTTTGACAATCGTCTCTCTAATATCACCAGTTTGGTCAGCAGTGGAGATTCAAAGAGAGAGGAAGATCGATTTGAAGCTTCTGAGAAGGCGATTCTTCGTTGGGCTCCTGGTCATGGAGCTTCTCGGAACACTCGGTACTGGGAGGATTCGCGGGACGAGGCAGCTGAGTACTTATCGGCGGTTGATGATATCATTCAGTGGATCGACGACTTGTCGATTCGTGCGGATTCAACCGAGTTCGTCGATCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGATGAGTTCCGTCATATGATGATCAGGAGCACCGTTCCTCTCGATGGTGAGCATCTCCACGGTTCAATTCGTAGGATTTCGCTTTCTTTTGCTGCACACGACCCTGAAAATTCCCATGAGTTTGAGTCGTTTGCCGATGTTGATCGCGGTTCTGGAATTTACCATGAGCGTGGTGTCAGTTTGGGCGATGACTTGCGGGTCGATTTGATCAATCCTGATGCAGTTGATGATTTGAAAGAGATCGCGGACAGGATGATTCGGTCCGGATACGAAAAAGAGTGTGTGAATGTGTATACTAGTGTTCGTCGTGATGCTTTAGATGAATGCTTGGTAGTGCTTGGAGTTGAGAAGCTGAGTATTGAGGATGTCCAAAAAATTGACTGGAAAATTTTGGATGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCTGTGTTCGAGTACTTTTGACCGGGGAGAAGCAGCTGTGTGACTATATCTTTAGTGGGTCCGAGGACTCTCAGGAAGTTTGTTTCAATGAGGCTGCAAAAGGGTGCATCAGGCAACTACTGAACTTTGCAGAAGCCATTGCTATAGGGGAAAGGTCTGTGGAGAAGCTATTTCGTATTCTAGATATGTATGACGCCCTGGCATATGTTTTACCGGACTTGCAGGATATGGTCACTGATGAATTTGTGGTTGATGAAGCCAAAGGAGTGCTTTCTAGGCTGGGAGAGGCAGCTAAAGGTACATTTTCCGAATTCGAGAATGCTGTTCGGAATGAAACTTCTAAGAAAACTTTGTTGAATGCTGAGATTCACCCGCTCACTCGTTATGTAATGAATTACTTGAGCTTGCTTGTGGTTTATAGCAAGACTCTGGATGAACTCTTAGAAGGTGATGATGAGGATTTGCGTCATCTAGGCGATGGTGCTGACAACGTGGAGTTAGAAACTATGTCGCCTTTAGCCTGTCGACTGTTTTCATTGATAGCATCACTGGAGGCAAATCTTGAGAGGAAATCCAAACTTTATGGGGATGATTCAATACAATATATATTTCTCATGAATAATATACAATACATTGTGCAGAAAGTAAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGTTGGGTTCGTAAGCGTCGAGGCCAGGTTCGCATATATGCAACAAGCTATCTTAGAGCGTCTTGGGGAAAACTACTAATTTTCTTGAAGGAAGAAGGGACTGGTGGGAGCTCTAATAGTGCCCTGAAACTAGCTGCTTTAAAGGAAAAATTAAAAAAATTCAATGCTGGCTTTGAGGAAATCTATAGAGTTCAGACAGCTTGGAAGGTTGCAGATCCTCAACTTCGAGAAGAGCTCCGGATTTCAATATCGGCAAAGGCTTTACCTGCATATCGTGCTTTCTTGGGAAGACATGAAAGTCAGCTAGAGAATACAAGACATGCTGGGCGGTATTTAAAGTACACATCAGATCACTTGGAAAACTATTTATTGGACTTGTTTGAAGGATCACAGTGTGTAATACATCACTTACGAAGAAAAAGTAGTTCGTAG 1971 44.8 MATTTSIGGGGGGGGGEDRVMATAQQIVNSLNTPKEVRDDMLMILSSFDNRLSNITSLVSSGDSKREEDRFEASEKAILRWAPGHGASRNTRYWEDSRDEAAEYLSAVDDIIQWIDDLSIRADSTEFVDRAENAIQIAMSRLEDEFRHMMIRSTVPLDGEHLHGSIRRISLSFAAHDPENSHEFESFADVDRGSGIYHERGVSLGDDLRVDLINPDAVDDLKEIADRMIRSGYEKECVNVYTSVRRDALDECLVVLGVEKLSIEDVQKIDWKILDEKMKKWIQAVKVCVRVLLTGEKQLCDYIFSGSEDSQEVCFNEAAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYDALAYVLPDLQDMVTDEFVVDEAKGVLSRLGEAAKGTFSEFENAVRNETSKKTLLNAEIHPLTRYVMNYLSLLVVYSKTLDELLEGDDEDLRHLGDGADNVELETMSPLACRLFSLIASLEANLERKSKLYGDDSIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATSYLRASWGKLLIFLKEEGTGGSSNSALKLAALKEKLKKFNAGFEEIYRVQTAWKVADPQLREELRISISAKALPAYRAFLGRHESQLENTRHAGRYLKYTSDHLENYLLDLFEGSQCVIHHLRRKSSS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11366071 11368443 + Sed0020322.1 Sed01g1563 700867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1563 656 PANTHER EXOCYST COMPLEX PROTEIN EXO70 54 643 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed01g1563 656 Pfam Exo70 exocyst complex subunit C-terminal 279 638 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed01g1563 656 FunFam Exocyst subunit Exo70 family protein 87 648 - -
Sed01g1563 656 SUPERFAMILY Cullin repeat-like 92 641 IPR016159 -
Sed01g1563 656 Gene3D Exocyst complex component Exo70 88 646 - -
Sed01g1563 656 Pfam Exocyst complex component Exo70 N-terminal 72 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1201 Sed-Chr1:8974012 Sed01g1563 Sed-Chr1:11366071 1.20E-108 dispersed
Sed01g1563 Sed-Chr1:11366071 Sed08g0032 Sed-Chr8:145981 7.50E-234 dispersed
Sed01g1563 Sed-Chr1:11366071 Sed12g2505 Sed-Chr12:34551622 7.60E-226 wgd
Sed01g1563 Sed-Chr1:11366071 Sed08g2438 Sed-Chr8:37407388 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1563 K07195 - csv:101212753 1097.03