Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1571 ATGGCCGTCGCAATTCACGATGTCAAGTCCGCGGCCGGTTTGAAAAAGCTCGATGAATACTTGCTAAGTCGTAGCTACATTAGCGGGTATCAGCCTTCAAAGGATGATGTTACCGTTTATGAAGCTCTTTCCAAGCCCGTTTCCGGCGATTATGTGAACGTGTCTAGGTGGAGCAAGCACATCGAAGCACTCTTGAGAGTTTCATCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTTGAATCAGCAGAGGCCGTTGCAACCCCACCTGCTGCCGACGCAAAGGCTGCCGATGATGACGATGATGATGATATTGATCTTTTTGGAGAAGAGACCGAGGAGGAAAAGAAGGCTGCCGAGGAGCGTGCAGCTTCCATCAAGGCTTCTGCTAAGAAGGAATCTGGAAAGTCGTCAGTTCTGATGGATGTCAAGCCGTGGGATGATGAGACTGATATGAAGAAGCTTGAAGAGGCTGTAAGAGGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAACTTGTTGCTGTTGGATATGGTATCAAGAAATTGCAGATTATGCTCACCATTGTTGATGACCTCGTGTCTGTGGACGATCTCATTGAGGAACGTCTGACAGTCGAACCCATCAATGAGTATGTTCAGAGCTGTGATATCGTGGCCTTCAACAAAATTTAA 675 47.56 MAVAIHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEALSKPVSGDYVNVSRWSKHIEALLRVSSVFGEGSGVKFESAEAVATPPAADAKAADDDDDDDIDLFGEETEEEKKAAEERAASIKASAKKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMEGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLIEERLTVEPINEYVQSCDIVAFNKI 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11408661 11410889 + Sed0010059.1 Sed01g1571 700875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1571 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 224 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Sed01g1571 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed01g1571 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 100 108 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed01g1571 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed01g1571 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Sed01g1571 224 Gene3D - 3 76 - -
Sed01g1571 224 Coils Coil 108 128 - -
Sed01g1571 224 FunFam Elongation factor 1-beta 1 like 129 224 - -
Sed01g1571 224 SUPERFAMILY GST C-terminal domain-like 9 70 IPR036282 -
Sed01g1571 224 CDD EF1B 133 224 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed01g1571 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Sed01g1571 224 FunFam Elongation factor 1-delta 1 3 78 - -
Sed01g1571 224 Gene3D - 128 224 IPR014717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1571 Sed-Chr1:11408661 Sed08g2440 Sed-Chr8:37415443 2.60E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1571 K03232 - csv:101215827 304.293