Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1571 | ATGGCCGTCGCAATTCACGATGTCAAGTCCGCGGCCGGTTTGAAAAAGCTCGATGAATACTTGCTAAGTCGTAGCTACATTAGCGGGTATCAGCCTTCAAAGGATGATGTTACCGTTTATGAAGCTCTTTCCAAGCCCGTTTCCGGCGATTATGTGAACGTGTCTAGGTGGAGCAAGCACATCGAAGCACTCTTGAGAGTTTCATCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTTGAATCAGCAGAGGCCGTTGCAACCCCACCTGCTGCCGACGCAAAGGCTGCCGATGATGACGATGATGATGATATTGATCTTTTTGGAGAAGAGACCGAGGAGGAAAAGAAGGCTGCCGAGGAGCGTGCAGCTTCCATCAAGGCTTCTGCTAAGAAGGAATCTGGAAAGTCGTCAGTTCTGATGGATGTCAAGCCGTGGGATGATGAGACTGATATGAAGAAGCTTGAAGAGGCTGTAAGAGGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAACTTGTTGCTGTTGGATATGGTATCAAGAAATTGCAGATTATGCTCACCATTGTTGATGACCTCGTGTCTGTGGACGATCTCATTGAGGAACGTCTGACAGTCGAACCCATCAATGAGTATGTTCAGAGCTGTGATATCGTGGCCTTCAACAAAATTTAA | 675 | 47.56 | MAVAIHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEALSKPVSGDYVNVSRWSKHIEALLRVSSVFGEGSGVKFESAEAVATPPAADAKAADDDDDDDIDLFGEETEEEKKAAEERAASIKASAKKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMEGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLIEERLTVEPINEYVQSCDIVAFNKI | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11408661 | 11410889 | + | Sed0010059.1 | Sed01g1571 | 700875 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1571 | 224 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 224 | IPR049720 | GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER) | |
Sed01g1571 | 224 | SMART | EF1_GNE_2 | 135 | 224 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Sed01g1571 | 224 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 100 | 108 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Sed01g1571 | 224 | Pfam | EF-1 guanine nucleotide exchange domain | 137 | 224 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Sed01g1571 | 224 | SUPERFAMILY | eEF-1beta-like | 132 | 224 | IPR036219 | - | |
Sed01g1571 | 224 | Gene3D | - | 3 | 76 | - | - | |
Sed01g1571 | 224 | Coils | Coil | 108 | 128 | - | - | |
Sed01g1571 | 224 | FunFam | Elongation factor 1-beta 1 like | 129 | 224 | - | - | |
Sed01g1571 | 224 | SUPERFAMILY | GST C-terminal domain-like | 9 | 70 | IPR036282 | - | |
Sed01g1571 | 224 | CDD | EF1B | 133 | 224 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Sed01g1571 | 224 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 213 | 224 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Sed01g1571 | 224 | FunFam | Elongation factor 1-delta 1 | 3 | 78 | - | - | |
Sed01g1571 | 224 | Gene3D | - | 128 | 224 | IPR014717 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1571 | Sed-Chr1:11408661 | Sed08g2440 | Sed-Chr8:37415443 | 2.60E-77 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1571 | K03232 | - | csv:101215827 | 304.293 |