Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1572 | ATGGCACCGCCAACTCTGCTTCTCTCTCTCCTCTCCCTCTTCCTCCTATTTTCCATCTCCGCCGCTCTCTCCGCCGCCTCCGCCGCCGTGAAAAACCCTGAACTCGTCGTAGAAGAAGTGCACAGAAGCATAATCAACGCGACGAAGAGGAGAAATCTGGGCTATCTCTCATGCGGGACAGGAAACCCAATCGACGATTGCTGGCGGTGCGATTCGAATTGGGAGAAGAATCGGCAGAGACTCGCCGATTGCGGGATCGGATTCGGCAAAAACGCAGTCGGCGGCCGCGACGGGAAAATCTACGTGGTCACAGACTCCGGCGACGACGATCCAGTCAACCCAAAACCGGGAACTCTCCGGTACGCCGTGATCCAAGACGATCCCCTCTGGATCATCTTCGCCCGCGACATGGTCATCAAATTGAAAGAGGAGCTGATCATGAACTCGTTCAAAACAATCGACGGCCGCGGCGCCAGCGTCCACATCGCCGGCGGGCCCTGCATCACGATCCAGTACGTGTCGAACATCATCATCCACGGTTTAAACATCCACGACTGCAAACAAGGCGGAAACACGGACGTTCGAGATTCCCCTCGCCATTTCGGGTTCCGTACGATTTCCGACGGCGACGGCGTTTCTATCTTCGGCGGCAGCCATATCTGGGTCGATCACTGCTCGTTGTCGAACTGTAACGACGGGTTGATCGACGCCATTCATGGGTCTACGGCGATTACGATCTCGAACAATTACATGACGCATCATGATAAGGTGATGTTGCTTGGGCACAGTGATTCGTATACGCAGGACAAGAATATGCAGGTTACGATTGCTTTCAACCATTTTGGGGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGGCATGGGTATTTTCATGTGGTAAACAATGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCCACTATCAACAGTCAAGGGAACCGTTTTCTTGCACCAAATGACAGATTCAGCAAAGAGGTGACAAAATATGAGGATGCACCAGAAAGCGAATGGAAGAATTGGCATTGGAGATCAGAAGGAGATTTGATGCTAAACGGTGCGTTTTTCACCAGCTCCGGCGCCGGAGCCTCATCGAGCTACGCCAGAGCCTCCAGTTTAGGGGCCCGACCGTCGTCACTCGTCGGAACAATTACGACCAATGCGGGTGCACTCACCTGCCGAAAGGGCTCCCACTGCTGA | 1233 | 53.37 | MAPPTLLLSLLSLFLLFSISAALSAASAAVKNPELVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAVGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDDPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVSNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTSSGAGASSSYARASSLGARPSSLVGTITTNAGALTCRKGSHC | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11423477 | 11425853 | - | Sed0018395.1 | Sed01g1572 | 700876 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1572 | 410 | FunFam | Pectate lyase | 61 | 403 | - | - | |
Sed01g1572 | 410 | Gene3D | - | 61 | 403 | IPR012334 | - | |
Sed01g1572 | 410 | Pfam | Pectate lyase | 143 | 327 | IPR002022 | - | |
Sed01g1572 | 410 | SUPERFAMILY | Pectin lyase-like | 38 | 405 | IPR011050 | - | |
Sed01g1572 | 410 | PRINTS | Pollen allergen Amb family signature | 108 | 133 | IPR018082 | - | |
Sed01g1572 | 410 | PRINTS | Pollen allergen Amb family signature | 288 | 307 | IPR018082 | - | |
Sed01g1572 | 410 | PRINTS | Pollen allergen Amb family signature | 352 | 376 | IPR018082 | - | |
Sed01g1572 | 410 | PRINTS | Pollen allergen Amb family signature | 208 | 229 | IPR018082 | - | |
Sed01g1572 | 410 | PRINTS | Pollen allergen Amb family signature | 144 | 160 | IPR018082 | - | |
Sed01g1572 | 410 | PRINTS | Pollen allergen Amb family signature | 310 | 329 | IPR018082 | - | |
Sed01g1572 | 410 | PRINTS | Pollen allergen Amb family signature | 381 | 404 | IPR018082 | - | |
Sed01g1572 | 410 | PRINTS | Pollen allergen Amb family signature | 84 | 101 | IPR018082 | - | |
Sed01g1572 | 410 | SMART | amb_all | 136 | 333 | IPR002022 | - | |
Sed01g1572 | 410 | PANTHER | PECTATE LYASE 18-RELATED | 15 | 407 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1572 | Sed-Chr1:11423477 | Sed03g2641 | Sed-Chr3:42361412 | 1.90E-182 | dispersed | |
Sed01g1572 | Sed-Chr1:11423477 | Sed12g0409 | Sed-Chr12:2470045 | 8.50E-167 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1572 | K01728 | - | csv:101209736 | 771.541 |