Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1572 ATGGCACCGCCAACTCTGCTTCTCTCTCTCCTCTCCCTCTTCCTCCTATTTTCCATCTCCGCCGCTCTCTCCGCCGCCTCCGCCGCCGTGAAAAACCCTGAACTCGTCGTAGAAGAAGTGCACAGAAGCATAATCAACGCGACGAAGAGGAGAAATCTGGGCTATCTCTCATGCGGGACAGGAAACCCAATCGACGATTGCTGGCGGTGCGATTCGAATTGGGAGAAGAATCGGCAGAGACTCGCCGATTGCGGGATCGGATTCGGCAAAAACGCAGTCGGCGGCCGCGACGGGAAAATCTACGTGGTCACAGACTCCGGCGACGACGATCCAGTCAACCCAAAACCGGGAACTCTCCGGTACGCCGTGATCCAAGACGATCCCCTCTGGATCATCTTCGCCCGCGACATGGTCATCAAATTGAAAGAGGAGCTGATCATGAACTCGTTCAAAACAATCGACGGCCGCGGCGCCAGCGTCCACATCGCCGGCGGGCCCTGCATCACGATCCAGTACGTGTCGAACATCATCATCCACGGTTTAAACATCCACGACTGCAAACAAGGCGGAAACACGGACGTTCGAGATTCCCCTCGCCATTTCGGGTTCCGTACGATTTCCGACGGCGACGGCGTTTCTATCTTCGGCGGCAGCCATATCTGGGTCGATCACTGCTCGTTGTCGAACTGTAACGACGGGTTGATCGACGCCATTCATGGGTCTACGGCGATTACGATCTCGAACAATTACATGACGCATCATGATAAGGTGATGTTGCTTGGGCACAGTGATTCGTATACGCAGGACAAGAATATGCAGGTTACGATTGCTTTCAACCATTTTGGGGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGGCATGGGTATTTTCATGTGGTAAACAATGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCCACTATCAACAGTCAAGGGAACCGTTTTCTTGCACCAAATGACAGATTCAGCAAAGAGGTGACAAAATATGAGGATGCACCAGAAAGCGAATGGAAGAATTGGCATTGGAGATCAGAAGGAGATTTGATGCTAAACGGTGCGTTTTTCACCAGCTCCGGCGCCGGAGCCTCATCGAGCTACGCCAGAGCCTCCAGTTTAGGGGCCCGACCGTCGTCACTCGTCGGAACAATTACGACCAATGCGGGTGCACTCACCTGCCGAAAGGGCTCCCACTGCTGA 1233 53.37 MAPPTLLLSLLSLFLLFSISAALSAASAAVKNPELVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAVGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDDPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVSNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTSSGAGASSSYARASSLGARPSSLVGTITTNAGALTCRKGSHC 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11423477 11425853 - Sed0018395.1 Sed01g1572 700876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1572 410 FunFam Pectate lyase 61 403 - -
Sed01g1572 410 Gene3D - 61 403 IPR012334 -
Sed01g1572 410 Pfam Pectate lyase 143 327 IPR002022 -
Sed01g1572 410 SUPERFAMILY Pectin lyase-like 38 405 IPR011050 -
Sed01g1572 410 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Sed01g1572 410 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Sed01g1572 410 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Sed01g1572 410 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Sed01g1572 410 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Sed01g1572 410 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Sed01g1572 410 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Sed01g1572 410 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Sed01g1572 410 SMART amb_all 136 333 IPR002022 -
Sed01g1572 410 PANTHER PECTATE LYASE 18-RELATED 15 407 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1572 Sed-Chr1:11423477 Sed03g2641 Sed-Chr3:42361412 1.90E-182 dispersed
Sed01g1572 Sed-Chr1:11423477 Sed12g0409 Sed-Chr12:2470045 8.50E-167 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1572 K01728 - csv:101209736 771.541