Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1599 ATGGCGGATCGAGATCGAAACCTCAACGCGGCCGCTCATCACGTCGATCTCCGGAGCGGTTTCTGTCCACAAACCAAGATTTTCCACAGTCTCCGACCACCGCTCTCGCTTCCGCCTGTATCGCAGCCTCTCACCGTCGCCGGACATGCACTTTCTCTTCTCCGATCCTCCCCTCCTCCGCCGAACACCACCGCTCTCGTCGACTTAAACTCCGGCGTCACTGTCTCCTACGCCCTTTTCCTCCGCCAAATCCATAACCTCACCCACAATCTTAGGGCTCACTACTCCCTCTCCCATGGACAAGTCGCTTTTATTCTTTCCCCGACTTCTCTGCAAGTACCTGTCCTGTATTTTGCGCTGTTATCCCTCGGCGTTGCTGTATCTCCGGCTAATCCAATCGCCTCCGATTCGGAGATTTCTCACCAGGTTCGACTCTGTAAACCGGACATTGCCTTCGTTACGTCCTCAGTGGCGTCCAAGCTCCCAAATGTTCAAATCCGCAATGTCGTGATAGATTCGCCGGAGTTTCTACCGATGATGACCGAAAACAGTTTATCAGATGGTTCTGTTGACGATGAAATCAATCAAAACAGCTCGGCGGCGATTCTGTACTCGTCCGGGACTACCGGACGGGTGAAAGGCGTTTTACTGACTCATCGGAACCTCATTTCGTCGATCTCTGGTGCTCAGGTTTTAGAGACGGCGGCCGACGACGGAGAGATGCAGCCACATCCGGTTTCTCTCTGTCCTTTACCTTTGTTTCATGTTTTCGGATTCTTTATGATGATTCGTTCGATTTCGGCAGGCCATACGTTGGTTCTGATGCGAAAATTCGATTTCGAGGGGATGTTACGAGCCGTAGAGAAGTATAGGGTTACATACATCCCGGTTTCGCCGCCACTGGTGGTGGCGATGGCTAAGTCGGAGCTGGCGGCGAAGTATGATCTCAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCCCTTGGGAAAGAGATCATCGATAAATTCAATGTTAAGTTCCCCAACGTAGAAATTGTACAGGGATATGGCTTGACAGAGAGTTCAGCAGGGGCATCGAGGACTGTGGAGCCTGAAGAATGCAGGAATACAAGTTCAGTAGGTCGCTTATGTGAAAGTCTAGAAGCCAAAATAGTGGATCCTGAATCTGGAGAGGCCTTACCTCCTGGCCGCAAAGGAGAACTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAGAAGGCAACTGCTGAAACCTTGCATCCGGAGGGATGGCTTAAGACTGGCGACCTTTGCTATTTTGATTCTGATGGATATCTTTACATTGTCCCACCTGCGGAATTGGAACATTTGCTTCAATCTAACCCCGAGATTAGCGACGCTGCTGTGATACCCTATCCTGATGAAGAAGCGGGAGAGATTCCCATGGCTTATATTGTTAGAAAGCCTGGAAGCAATATCACTGAAGCTCAAGTCGCACCATACAAGAAAATCCGGCGAGTGTCGTTTGTTAACACGATCCCGAAATCGCCTGCAGGGAAGATTCTTAGGAGGGAGCTTTATTTAAAATACTTACTACCCGTCGGCAAGTTTTTCTGTATACTAATTTGCTCGGACCAGTTTGAGCCACACATTTTCACTCCCACTTCAATGGCGAATCACGTTGATCCCCGGAGCGGCTTCTGTCCACAGACCAAGATTTTCCACAGTCTCCGACCACCGTCCTCGCTTCCGCCTCTATCTCAGCCTCTCACCGTCGCCGGACACGCACTTTCTCTTCTCCGATCTTCCCCTCCTCCGCCGAACACCTCCGCCCTCGTCGACTTCAACTCCGGCGTCACTGTCTCCTACGCTCTCTTCCTCCGCCAAATCCGCAACCTGACCTTTCATCTTAGGGCTCACTACTCCCTCTCCGATGGTCAAGTCGCTTTTATTCTTTCCCCGACTTCTCTGCAAGTCCCTGTCCTGTATTTTTCGCTCTTATCTCTCGGCGTCGTTGTTTCTCCGGCTAATCCGATCGGTTCCGATTCGGAGATCTCGCTCCAGGTTCGCCTCTGTAAACCGGACATTGTCTTCGTTACGTCTTCAGTGGTGTCCAAGCTACAGAATGTTCAAATCCGCACCGTCGTGATAGATTCGCCGGATTTTTTGTCGATGCTGTCTGAAAGCAGTTTACCAGATGGAGTGGACGATGGTGCTGTTGGCGTCAAAATCGATCAAAACAACTCGGCGGCCATTCTGTACTCGTCCGGGACTACCGGACGAGTGAAAGGCGTTTTACTGTCTCATCGGAACCTCATATCGTCGATCTCTGGTCTTCAGGTTTTAGAGACGGCGGCCGACGACGGAGTGATGCAGCCGCATCCGGTTTCTCTCTGTCTGCTACCTTTGTTTCATGTTTTCGGATTCTATATGATGATTCGATCGATTTCGTTAGGCGATACGTTGGTTCTGATGGGAAAATTCGACTTCGAGGGGATGTTGAGAGCCGTGGAGAAGTACAGGGTCACATACATCCCGGTTTCGCCGCCGCTGGTGGTGGCGATGGCTAAGTCGGAGCTGGTGGCGAAGTATGATCTCAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCCCTTGGGAAAGAAGTCATCGATAAATTCCATGTTAAGTTCCCCAACGTAGATATTGCGCAGGGATATGGCTTGACAGAGAGTTCAGCAGCGGCAGCAACAACTGTGGGGCCAGAAGAATTCAGCAATACAAGTTCAGTGGGTCGCTTATCTCAAAATTTGGAAGCCAAAATAGTGGATCCTGCATCTGGAGAGGCCTTACCTCCTGGTCGCAAAGGAGAACTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAGAAGGCAACTGCTGAAACCTTGCATCCGAAGGGATGGCTTAAGACTGGCGACCTTTGCTATTTTGATTCTGATGGATATCTCTACATTGTCGATAGATTGAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCGAACCCCGAGATCAGTGATGTCGCTGTGATACCCTATCCTGATGAAGAAGCTGGGGAGATTCCCATGGCTTATATTGTTAGAAAGCCTGGAAGCAATATCACTGAAGCTCAAGTCATTGATTTCATTGCGAAACAGGTGGCACCATACAAGAAAATCCGGCGAGTGTCGTTTGTGAACGCGATTCCAAAATCGCCTGCAGGGAAGATTCTTAGAAGGGAGCTTGTCAAACATGCTCTCTCTCGTGGTTCTAGTAAGTTATAA 3321 49.92 MADRDRNLNAAAHHVDLRSGFCPQTKIFHSLRPPLSLPPVSQPLTVAGHALSLLRSSPPPPNTTALVDLNSGVTVSYALFLRQIHNLTHNLRAHYSLSHGQVAFILSPTSLQVPVLYFALLSLGVAVSPANPIASDSEISHQVRLCKPDIAFVTSSVASKLPNVQIRNVVIDSPEFLPMMTENSLSDGSVDDEINQNSSAAILYSSGTTGRVKGVLLTHRNLISSISGAQVLETAADDGEMQPHPVSLCPLPLFHVFGFFMMIRSISAGHTLVLMRKFDFEGMLRAVEKYRVTYIPVSPPLVVAMAKSELAAKYDLSSLQILGCGGAPLGKEIIDKFNVKFPNVEIVQGYGLTESSAGASRTVEPEECRNTSSVGRLCESLEAKIVDPESGEALPPGRKGELWLRGPGIMKGYVGDEKATAETLHPEGWLKTGDLCYFDSDGYLYIVPPAELEHLLQSNPEISDAAVIPYPDEEAGEIPMAYIVRKPGSNITEAQVAPYKKIRRVSFVNTIPKSPAGKILRRELYLKYLLPVGKFFCILICSDQFEPHIFTPTSMANHVDPRSGFCPQTKIFHSLRPPSSLPPLSQPLTVAGHALSLLRSSPPPPNTSALVDFNSGVTVSYALFLRQIRNLTFHLRAHYSLSDGQVAFILSPTSLQVPVLYFSLLSLGVVVSPANPIGSDSEISLQVRLCKPDIVFVTSSVVSKLQNVQIRTVVIDSPDFLSMLSESSLPDGVDDGAVGVKIDQNNSAAILYSSGTTGRVKGVLLSHRNLISSISGLQVLETAADDGVMQPHPVSLCLLPLFHVFGFYMMIRSISLGDTLVLMGKFDFEGMLRAVEKYRVTYIPVSPPLVVAMAKSELVAKYDLSSLQILGCGGAPLGKEVIDKFHVKFPNVDIAQGYGLTESSAAAATTVGPEEFSNTSSVGRLSQNLEAKIVDPASGEALPPGRKGELWLRGPGIMKGYVGDEKATAETLHPKGWLKTGDLCYFDSDGYLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEISDVAVIPYPDEEAGEIPMAYIVRKPGSNITEAQVIDFIAKQVAPYKKIRRVSFVNAIPKSPAGKILRRELVKHALSRGSSKL 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11619951 11629069 - Sed0024012.1 Sed01g1599 700903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1599 1106 CDD 4CL 582 1094 - -
Sed01g1599 1106 FunFam 4-coumarate--CoA ligase 2 1000 1101 - -
Sed01g1599 1106 SUPERFAMILY Acetyl-CoA synthetase-like 605 1100 - -
Sed01g1599 1106 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 565 1094 - GO:0016405(PANTHER)
Sed01g1599 1106 FunFam Long-chain-fatty-acid--CoA ligase FadD 583 999 - -
Sed01g1599 1106 Pfam AMP-binding enzyme C-terminal domain 451 518 IPR025110 -
Sed01g1599 1106 Pfam AMP-binding enzyme C-terminal domain 1013 1088 IPR025110 -
Sed01g1599 1106 FunFam Long-chain-fatty-acid--CoA ligase FadD 39 448 - -
Sed01g1599 1106 ProSitePatterns Putative AMP-binding domain signature. 750 761 IPR020845 -
Sed01g1599 1106 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Sed01g1599 1106 Gene3D - 1000 1100 IPR045851 -
Sed01g1599 1106 Gene3D - 446 528 IPR045851 -
Sed01g1599 1106 Gene3D - 583 999 IPR042099 -
Sed01g1599 1106 Gene3D - 39 445 IPR042099 -
Sed01g1599 1106 CDD 4CL 38 524 - -
Sed01g1599 1106 SUPERFAMILY Acetyl-CoA synthetase-like 60 528 - -
Sed01g1599 1106 Pfam AMP-binding enzyme 60 413 IPR000873 -
Sed01g1599 1106 Pfam AMP-binding enzyme 605 961 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1599 Sed-Chr1:11619951 Sed06g2012 Sed-Chr6:44240688 1.80E-110 dispersed
Sed13g2178 Sed-Chr13:26382796 Sed01g1599 Sed-Chr1:11619951 7.40E-134 transposed
Sed01g1599 Sed-Chr1:11619951 Sed08g2452 Sed-Chr8:37492296 8.80E-235 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1599 K01904 - csv:101211791 879.782