Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1621 ATGTCTCAGGATCTGTGTTTGGATCAAGACCTAGATGAATCCGATCCCGAGTTCGTGGAGATTGATCCTACAGGTCGATATGGACGGTATAAGGAAGTTTTAGGTAAAGGGGCATTCAAAAAAGTATACAGGGCTTTTGATGAATTGGAAGGAATTGAAGTTGCTTGGAATCAGGTTAAAGTAACAGATCTATTGCGGAATTCTGAAGATTTGGAGCGACTCTATTCTGAAGTTCACTTGCTCAAGACATTGAAGCACAAGAACATTATCAAATTTTACAATTCATGGGTTGATACTAAAAATGAAAACATCAACTTCATTACTGAGATATTCACTTCAGGGACTCTACGACAATATAGAAAGAAGCACAAACGTGTTGATTTGAGAGCACTGAAAAAGTGGTCTAGACAGATATTAGAAGGTCTTTTGTATCTTCATAGTCATGATCCTCCTGTTATCCATAGAGATTTAAAATGTGACAATATTTTTGTCAATGGAAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCTGCCATTCTTCAGCAAGCTCGTTCAGCTCACAGTGTCATCGGGACACCAGAGTTTATGGCTCCAGAGCTATATGAGGAGGAATACAATGAGCTTGTGGATATTTATGCCTTTGGCATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATACTGAATGTGCAAATGCTGCTCAAATATTTAAGAAGGTCACATCGGGGATAAAGCCAGCATCATTAGCAAAAGTCACCGATGCAAGAGTTAGAGCATTTATAGAGAAGTGTATTGCAAATGTTTCAAATCGCTTGTCTGCAAAAGATCTTTTAAGAGATCCATTTCTTCAACCGGATGATGATTATGAAAGTATATCGCATCGTTTACACCTGGAAGCACATCATACAAAAAAAAATGAGCATATTGATAATGATAGAAGTGTAGATGCTATTCTTGCCGAAACAAGCCGAGACTTCAGCATGCATGGTGAGAGAAAAGATGTTAACAAGATATTTCTGAAACTACAAATTTTAGACTCCACGGGTAACTTTCGCAATATCCATTTTCCATTTGATATTGAAGCCGACACATCAATTTCTGTTGCTAGTGAAATGGTTCAAGAGTTGGATCTTTCAGATCAAGATGTTTCCACGATTTCTGAAATGATCGAAAGTGAAATTCGATCTTACATTCCAAATTGGACATCCGTTGAGTATTCTAAAGATAATGTAAGAGTAGATGTTGCAATATCTGATAGCTCTCCATCTGAAACAAGGACGGTTGCCTCTCCATTATCTATTGAATCCAGTAATCTTGCATTAGAGTTTATGCCGTCGGGTCGCAAGTATTGGTCTGATTCTCCAAAAGGAATGGGTGGTTGCTCTCCTTCTAAGCCAGGTCCTTCAAACTTATCTCATGCCTCGGAACAAAATGTTGAATCTTATAGTTCACAAATGACACAAATGCATGGAGACAATCTAGATCATGCAGCTATAATTAAAGGTTTAGAAAGTGAGCTTTTGTCTGATGTTAATGATGGACAGGATGAGAGTAGCTCCACTAATAACATTCATGCAAGCTTTGAGGCACATCACTTAGAAGAAAATCATGGAGTTTCAAAGCCAGACGAATCATTTGCCATAAAGATGGTTGAAAAACTTGAAAATGTGTTGACACGGCAAAAAGAGGAATTAGATGAACTTGAGAAGAAACATAAATTAGCTATTTCAGAACTTTTAGCTGAACTTACACCAGAGTCTTATCAAAAGGTTGTAGAGATGAGTAGGCTAAAGCATTCTGATTTCGATTTAGTTCTCTGA 1830 37.7 MSQDLCLDQDLDESDPEFVEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKRVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYTECANAAQIFKKVTSGIKPASLAKVTDARVRAFIEKCIANVSNRLSAKDLLRDPFLQPDDDYESISHRLHLEAHHTKKNEHIDNDRSVDAILAETSRDFSMHGERKDVNKIFLKLQILDSTGNFRNIHFPFDIEADTSISVASEMVQELDLSDQDVSTISEMIESEIRSYIPNWTSVEYSKDNVRVDVAISDSSPSETRTVASPLSIESSNLALEFMPSGRKYWSDSPKGMGGCSPSKPGPSNLSHASEQNVESYSSQMTQMHGDNLDHAAIIKGLESELLSDVNDGQDESSSTNNIHASFEAHHLEENHGVSKPDESFAIKMVEKLENVLTRQKEELDELEKKHKLAISELLAELTPESYQKVVEMSRLKHSDFDLVL 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11779009 11783214 + Sed0026130.1 Sed01g1621 700925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1621 609 CDD STKc_WNK 26 286 - -
Sed01g1621 609 SMART serkin_6 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1621 609 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Sed01g1621 609 Coils Coil 554 581 - -
Sed01g1621 609 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1621 609 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Sed01g1621 609 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1621 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1621 609 Gene3D - 326 404 - -
Sed01g1621 609 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Sed01g1621 609 MobiDBLite consensus disorder prediction 468 488 - -
Sed01g1621 609 FunFam Probable serine/threonine-protein kinase WNK1 12 109 - -
Sed01g1621 609 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Sed01g1621 609 MobiDBLite consensus disorder prediction 455 488 - -
Sed01g1621 609 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 579 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0550 Sed-Chr1:4117786 Sed01g1621 Sed-Chr1:11779009 1.70E-98 dispersed
Sed01g1621 Sed-Chr1:11779009 Sed08g1632 Sed-Chr8:31481504 2.60E-140 dispersed
Sed01g1621 Sed-Chr1:11779009 Sed04g1904 Sed-Chr4:33788917 5.90E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78616 PF00069 Pkinase 2.00E-51 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1621 K08867 - csv:101206177 995.727