Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1623 ATGGAGTCTTTTAATTCTTTTATCGCCTTGAAGGTTAAATATGGAGAAATTATAAGGCGCTTCTGTGTTAGAGTCCTTGATAACAATAAACTGGATCTTGACATCAATAGATTGAGAGCAAAAATACGTTACCTCTTTAACTTCTCTTCTGATACTGATTTTACAATGACTTATATGGATGAAGATGGTGATAGAGTGAGCCTAGTCAATGATGATGATCTGCATGATATGATGAGCCAACAGTTGAGACCATTGAGAATGAATGTGCATCTAAGAAATGAAAAAAGCAACCAATTCCATGATAGACTAGATGGAAGTTCTACCTCTCAGATGCCAGTAGCTCGTTCGCGTACTGGTCGTTCGGACTCGGAGGCTTTGAAATCCCTGCCAGAGGCAGAGACTTTATCAGAACTCCTTCTTGATGCTGCTTCAAAAGCCGAAGTTGCTAGCCATGTGCATACTGAATTTTCGAAGAGCCTTGTTCGGTTAGCAAAAGCACTTGGGAACTCAGATGTGCAGTCGACATCTGTTCCGGAGACGAGCACACAGAATGTTGCTACTGAGAGTTCTAAGACTGATCCTTCTCGTTCAGCTTATAAAGATAGTAAGATGATTAACTGTGGTAAGAACATTCGTGTAGATGCACCTGCTTCTGTTGATCATGGTCTTAATCCCCTTCCTCGCGATTCTTTTGCTTCGAGATTGATGTGCAATGACCCATATTTTTCACCTGTCACTCATCTAGATCATGATAAAATTAATGAGTCCCTTTTCAGCTGGTGGAGGCACTCTTTAAGTGGAGTACCCCCCATGGCTACTGGACCATCTATGCTTGGAACTGTAGGTGCATATCCAGAAATTTACCACGGTGGTTACAGTCCAATGATTAGCAGCAGCGGTTGCATCGAATCTACAGGGAGTGTGTTCCATAAAGGTGTTATGTGTGACTGCTGTGGAGCACGTCCGATTGTTGGTCCGCGGTTCAAATCCAAAGTGAAAGATAACTATGATCTCTGTAGTATCTGCTTTCCTGAAATGGGAAATGCGGCTGAATACATTAGAATTGATTATCCTGCCCCTTGTTGGTATCCAAGAATGCAAGCATTCAACCATAGACATTCTTTTGCCGACCCTCAAATAATTGATAATACATGGAGAAGTTCTAGAAAGCAGACTGAACTTGACGGTTGCTTCGTAGCTGATGTAAATGTCTTGGATGGCACTGTGATGCCCCCATTGACTCCATTTACCAAGATATGGCGGTTGCGTAACACTGGGAGTTCGAATTGGCCCCGTGGTACAAAACTAGAGTGGGTTGGAGGGGTCAACTTCGGCCCGTCACCTTCGTTCGAAATAGAGGTTCCTGGTCATGGACTACCTGTGGGTCAGGAAATTGATGTTGCAGTTAAGTTTATTTCCCCTCCATTACATGGTTGTTTCTCCTCATACTGGATGTTGGCATCTCCATCTGGCCAGAGGTTTGGGAAACATATTTGGGTTATCATTCAGGTTGATACAGCACTTGAGAGGACAGATACTAATTTTTCCCAAGCTTTGGACTTAAATTTACCCACTACAGAAATAAGTAGTGGTGATTCGGATGATCATGAAGATGATCTCTTTTTCTATCCTCCTGATCCCAGCTCCATTGCGAGGCCTGTACAACCCGATCATAATCTGCGGGTAAGTGGAACCGAGCAACAATTCGTAGTAAATGACAAGAGTCCTGCTGCTACTTTGGCTGAGGAGGAGGATAATCTGGTCTCTTCTCCTAGTGTTGATAACCATGGATATGTACCAAGTTCAACCACCAAGGTGCCCTCTGTGTCATACCCTCTTATTGATTTTTTTAAACCAATTCCAGCTGCATTCCCACCCCCTAAGGTTTCGGTTTCTCGATCATCTGAAAAGGTTAGTTCTAATAACCACCACAACGCAGAAGAAATCCTTCTTAAAGCACTTGTGGATATGGGATTCAAACAGATGGATCTGAACAAGGAAGTACTGAAGATGACCGGTTACGATCTTGAGAAGGCGGTGGACGAACTGTGCGGAGTAGCAGAATGGGATCCAATGATACAAGAGTTGGAGGAAATGGGATTTGATGATAAACAAATGAACAGAACACTTCTGATGAAGAACAATGGCAGCATGAAGCAAGTTGTGGTGGACCTTGTGTATGGCAACAAGGGCTTAGTTGAATTTAAGAAAGCTATCTAA 2220 43.02 MESFNSFIALKVKYGEIIRRFCVRVLDNNKLDLDINRLRAKIRYLFNFSSDTDFTMTYMDEDGDRVSLVNDDDLHDMMSQQLRPLRMNVHLRNEKSNQFHDRLDGSSTSQMPVARSRTGRSDSEALKSLPEAETLSELLLDAASKAEVASHVHTEFSKSLVRLAKALGNSDVQSTSVPETSTQNVATESSKTDPSRSAYKDSKMINCGKNIRVDAPASVDHGLNPLPRDSFASRLMCNDPYFSPVTHLDHDKINESLFSWWRHSLSGVPPMATGPSMLGTVGAYPEIYHGGYSPMISSSGCIESTGSVFHKGVMCDCCGARPIVGPRFKSKVKDNYDLCSICFPEMGNAAEYIRIDYPAPCWYPRMQAFNHRHSFADPQIIDNTWRSSRKQTELDGCFVADVNVLDGTVMPPLTPFTKIWRLRNTGSSNWPRGTKLEWVGGVNFGPSPSFEIEVPGHGLPVGQEIDVAVKFISPPLHGCFSSYWMLASPSGQRFGKHIWVIIQVDTALERTDTNFSQALDLNLPTTEISSGDSDDHEDDLFFYPPDPSSIARPVQPDHNLRVSGTEQQFVVNDKSPAATLAEEEDNLVSSPSVDNHGYVPSSTTKVPSVSYPLIDFFKPIPAAFPPPKVSVSRSSEKVSSNNHHNAEEILLKALVDMGFKQMDLNKEVLKMTGYDLEKAVDELCGVAEWDPMIQELEEMGFDDKQMNRTLLMKNNGSMKQVVVDLVYGNKGLVEFKKAI 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11796140 11799780 - Sed0026079.1 Sed01g1623 700927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1623 739 SMART PB1_new 7 92 IPR000270 GO:0005515(InterPro)
Sed01g1623 739 CDD UBA_NBR1 688 726 - -
Sed01g1623 739 SUPERFAMILY RING/U-box 301 362 - -
Sed01g1623 739 SUPERFAMILY CAD & PB1 domains 6 89 - -
Sed01g1623 739 MobiDBLite consensus disorder prediction 102 117 - -
Sed01g1623 739 MobiDBLite consensus disorder prediction 169 193 - -
Sed01g1623 739 CDD NBR1_like 392 505 IPR032350 -
Sed01g1623 739 Gene3D - 3 92 - -
Sed01g1623 739 ProSiteProfiles Zinc finger ZZ-type profile. 310 360 IPR000433 GO:0008270(InterPro)
Sed01g1623 739 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 644 683 IPR015940 -
Sed01g1623 739 Pfam PB1 domain 8 90 IPR000270 GO:0005515(InterPro)
Sed01g1623 739 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 9 726 - -
Sed01g1623 739 SMART zz_5 309 354 IPR000433 GO:0008270(InterPro)
Sed01g1623 739 MobiDBLite consensus disorder prediction 96 126 - -
Sed01g1623 739 MobiDBLite consensus disorder prediction 169 200 - -
Sed01g1623 739 Gene3D Immunoglobulins 388 508 IPR013783 -
Sed01g1623 739 Gene3D - 639 687 - -
Sed01g1623 739 Gene3D - 688 729 - -
Sed01g1623 739 Pfam Ig-like domain from next to BRCA1 gene 403 504 IPR032350 -
Sed01g1623 739 Gene3D - 303 376 IPR043145 -
Sed01g1623 739 Pfam Zinc finger, ZZ type 310 347 IPR000433 GO:0008270(InterPro)
Sed01g1623 739 ProSiteProfiles PB1 domain profile. 7 92 IPR053793 -
Sed01g1623 739 SUPERFAMILY UBA-like 688 727 IPR009060 GO:0005515(InterPro)
Sed01g1623 739 SUPERFAMILY UBA-like 647 684 IPR009060 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1623 K17987 - - csv:101205935 653.284
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41