Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1656 ATGGAAGAAACATTTTTCCCATTTCGTGGGATTAAGAATGATATTAGAGGAAGACTTCTATGTTATAAACAGGATTGGACTGGTGGACTTCGCTCTGGTATCAGGATCTTGGCCCCAACAACGTACATATTCTTTGCCTCAGCAATTCCAGTTATATCATTTGGGGAGCAGCTAGAAAGGAATACGTATGGGACTCTTACTGCCGTACAAACTCTAGCATCAACAGCAATATGCGGCATCATCCACTCGATCTTTGGGGGACAGCCTCTGCTCATTCTTGGGGTCGCTGAACCAACTGTTTTGATGTATACATTTATGTTCGACTTTGCAAAGGATCGAAAGGAATTGGGGAAGGAACTATTCTTAGCCTGGACAGGATGGGTCTGTGTATGGACAGCCATTTTGCTTTTCTTGTTGGCTGTGCTGGGTGCATGCTCCCTCATCAATAGGTTTACACGTCTTGCTGGAGAACTGTTTGGTCTGCTAATTGCCATGCTCTTTATGCAGCAGGCGATACGTGGTGTCGTGGAGGAATTTGGAATACCTCAGAGGGAAGATACTAATCAGGTGGCACTTCAACCTCCTTGGCGATTTGGCAATGGAATGTTTGCATTAGTGTTGTCCTTCGGGCTTCTACTAACTGCACTTAAAAGCCGTAAGGCTAGATCATGGCGCTATGGGACTGGTTGCCTACGGGGATTTATCGCGGATTATGGTGTTCCAATTATGGTGCTTGTATGGACAGCTATATCTTACATTCCAGTTAACAATGTCCCACATGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGTGCCTATTCAAATTGGACAGTTGTAAAGGAAATGTTGAAAGTGCCGCCATTGTATATAGTTGGAGCGTTCATACCAGCAACCATGATAGCAGTTCTTTACTACTTTGATCACAGTGTGGCATCTCAACTTGCCCAACAGAAAGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTTCTCCTAGGTTTTCTTGTTATACTGTGTGGGCTTATAGGCATACCACCTTCCAATGGTGTAATTCCTCAGTCTCCAATGCACACGAAAAGCTTAGCTACCCTTAAACATCAACTTTTGCGGAACAAGCTGGTAGCAGCAGCGCGTCAAAGTTTCCGTAAAAACTCAAACTTGAGTCAATTTTACAGGAACATGCAAGAGGCATATAATGAGATGCAAACCCCTTTAATTTACCAAAATCCACCAGCTGCGGGGCTGAAGGAGTTGAAAGAGACCACAATCCAACTGGCTTCAAGAACTGGCTACATTGATGCACCTGTTGATGAAACTATTTTCGATGTGGATAAAGATATTGATGATCTTCTCCCTGTGGAAGTCAAAGAACAACGCCTCAGCAATTTGCTTCAAGCAATAATGGTTGGTGGTTGTGTTGCTGCTATGCCTCTTTTAAAGAGGATCCCTACTTCGGTTCTTTGGGGCTACTTTGCTTTCATGGCAATCGAGAGCTTGCCTGGAAATCAATTCTGGGAAAGGATTCTACTGCTTTTCACTGCTCCGAACCGAAGATACAAGGTGCTGGAGGAATATCATGCAACCTTCCTAGAATCTGTCCCATTCAAGACAATTGCCACCTTCACCTTGTTTCAGACAGTGTATCTGTTGATGTGTTTTGGTTTAACATGGATTCCAATTGCTGGTGTTCTTTTTCCGCTGTTGATCATGCTTCTTGTCCCTGTGCGGCAATATTTTCTCCCTAAGTTCTTCAAAGGTGCTCATCTTCAGGACTTGGATGCTGCTGAATACGAGGAAGCCCCTGCGATCGCTTTTAATCCGTCGTTCGAAGATCGAATGGGAAGAACTCCCAACATTGACGATGGTGAAATACTCGACGAGATGATCACGAGAAGTCGTGGCGAGATTCGGCGTACGCAGAGTTCGAAAGTGACAAGCTCAACCCCAAGTTCTGTAGAGGGCATCAAACCTACATACAGCCCACAAATACCACAGAAACTGTACAGTCCAAGGATCAATGAGCTGAGAAGAGAGAGAAGTTCTTTATCTCCTGGAAAAGGACTTGACTTTAAGGCAAGTCCAAGTGCAGAACCTGAACCAGAACCAGAACCAGAACCAGGACCATCTTTTAGAAATTAA 2160 44.17 MEETFFPFRGIKNDIRGRLLCYKQDWTGGLRSGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTAICGIIHSIFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGKELFLAWTGWVCVWTAILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFGIPQREDTNQVALQPPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGFIADYGVPIMVLVWTAISYIPVNNVPHGIPRRLFSPNPWSQGAYSNWTVVKEMLKVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVAAARQSFRKNSNLSQFYRNMQEAYNEMQTPLIYQNPPAAGLKELKETTIQLASRTGYIDAPVDETIFDVDKDIDDLLPVEVKEQRLSNLLQAIMVGGCVAAMPLLKRIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLESVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYFLPKFFKGAHLQDLDAAEYEEAPAIAFNPSFEDRMGRTPNIDDGEILDEMITRSRGEIRRTQSSKVTSSTPSSVEGIKPTYSPQIPQKLYSPRINELRRERSSLSPGKGLDFKASPSAEPEPEPEPEPGPSFRN 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12020368 12026428 + Sed0022008.1 Sed01g1656 700960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1656 719 Pfam HCO3- transporter integral membrane domain 202 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1656 719 Pfam HCO3- transporter integral membrane domain 7 180 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1656 719 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed01g1656 719 FunFam probable boron transporter 2 18 60 - -
Sed01g1656 719 PANTHER ANION EXCHANGE PROTEIN 6 638 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Sed01g1656 719 Gene3D Helical hairpin bin 18 60 - -
Sed01g1656 719 MobiDBLite consensus disorder prediction 646 674 - -
Sed01g1656 719 MobiDBLite consensus disorder prediction 638 719 - -
Sed01g1656 719 MobiDBLite consensus disorder prediction 704 719 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1656 Sed-Chr1:12020368 Sed05g1284 Sed-Chr5:24556326 0.00E+00 dispersed
Sed01g1656 Sed-Chr1:12020368 Sed01g1657 Sed-Chr1:12020368 0.00E+00 tandem
Sed01g1656 Sed-Chr1:12020368 Sed08g2514 Sed-Chr8:37901717 2.50E-267 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1656 K24194 - csv:101203606 1347.03