Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1658 ATGCAGAGCTCTGCGTTCTCGTTATCGCCTTCTCTTCCTCTTCTCAAGCCTCGGCGGCCTTTGGCTCCCTCCTTCAGTTCTGGATGTAACTCAATTCGGTCATCTTCTTCGTCTTCCTCGAATTCCAGAGATCTCGGAGACCTAAAAAATGTTGCTATACCTTCCGCTTGGCACCGGCGATCTTGGACTTTGTCTTCCTCGCCTTTTTCCTCCGCCAAACTTCGGTCATGGACTGGTGTGCCCTCGCTTTCTTCGGATTCCGATGCGAGTCGTTTCAAGGTTCAGGCAACTGCGGTTCCGGATAGCGCAGGAGAGGCCGCAGGTGATGGCGGTAATCCGAAGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTACTCAAGGTGTTTCCATTCCCAGTGACTATCACCATGGTTCAATTTGCTGTAGGCACCGCACTTGTTCTTCTTATGTGGGGACTTAATCTCTACAAAAAGCCAAAGATTAGTGGTGCTCAGCTTGTTGCTATTCTGCCGTTGGCATTTGTTCACACATTGGGAAATCTTTTTACAAATATGAGTCTCGGGAAAGTGTCGGTATCGTTCACTCACACTATCAAAGCTATGGAGCCGTTCTTTTCAGTTATCCTGTCAGCAATGTTTCTTGGAGAGACTCCTACTCCCTGGGTAGTTGCATCTCTTCTGCCAATTGTTGGTGGCGTTGCATTGGCATCTGCCACTGAGGCCTCTTTCAACTGGTCTGGATTTACAAGTGCAATGGCATCCAATTTGACTAATCAATCTCGTAATGTCCTTAGCAAAAAGGTCATGGTGAAAAAGGAGGAGTCAATTGACAACATCACCCTCTTTTCAATAATAACAGTCATGTCCTTTTTCTTGTTATCCCCTGTGGCTATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACCTTCAATCAGCTGGATTGAACATGAAACAAGTGTACATTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCATACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCACCTGTTACACACTCAGTAGGCAATTGCGTAAAGCGTGTTGTGGTCATCGTGAGCTCCGTTATCTTCTTCCAAACACCTGTATCGCCAATCAACTCTATTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTGTATTCAAGGGTTAAGCGCATCAAAGCCAAGCCGAAGGCTGCTTAA 1260 46.19 MQSSAFSLSPSLPLLKPRRPLAPSFSSGCNSIRSSSSSSSNSRDLGDLKNVAIPSAWHRRSWTLSSSPFSSAKLRSWTGVPSLSSDSDASRFKVQATAVPDSAGEAAGDGGNPKKTLELGLLFGLWYLFNIYFNIYNKQVLKVFPFPVTITMVQFAVGTALVLLMWGLNLYKKPKISGAQLVAILPLAFVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVILSAMFLGETPTPWVVASLLPIVGGVALASATEASFNWSGFTSAMASNLTNQSRNVLSKKVMVKKEESIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNMKQVYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSIGTGIALAGVFLYSRVKRIKAKPKAA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12028864 12032322 - Sed0003826.1 Sed01g1658 700962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1658 419 Pfam Triose-phosphate Transporter family 118 407 IPR004853 -
Sed01g1658 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 163 252 - -
Sed01g1658 419 PANTHER SOLUTE CARRIER FAMILY 35 112 408 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Sed01g1658 419 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 117 417 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed01g1658 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 331 410 - -
Sed01g1658 419 MobiDBLite consensus disorder prediction 1 44 - -
Sed01g1658 419 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1658 Sed-Chr1:12028864 Sed12g0279 Sed-Chr12:1599613 5.80E-62 dispersed
Sed11g1912 Sed-Chr11:33588037 Sed01g1658 Sed-Chr1:12028864 6.70E-113 transposed
Sed01g1658 Sed-Chr1:12028864 Sed08g2515 Sed-Chr8:37910257 3.30E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1658 K15283 - csv:101203848 676.011