Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1660 ATGAGGAATTTGAACTGGTTGAAGCCAATATCAATCAATGGGAAAGCTGGGAGGAGGCTTTCCCTCGGAGAATACGAGCGGGCCGTGTCGTGGTCGAAGTATTTGGTGTCTTCAGGTGCAGAAATAAAGGGAGAGGGAGAAGAAGAATGGAGTGCAGACATGTCCCAGTTGTTCATTGGCTTCAAGTTTGCTACTGGAAGGCACAGCAGGATTTATAGAGGCGTGTATAAGCAGATGGATGTTGCAATTAAGCTCATAAGCCAGCCTGAGGAGGATGAAAGCTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGTCTAAGACATCCTAATATCATCACTTTCATTGCAGCTTGCAAGAAAGCTCCAGTTTTTTGTATTATCACAGAGTATATGGCAGGGGGTTCGTTACGAAAATATCTCCACCAGCAGGAGCCGCATTCCGTTCCGCTGGACTTGGTTCTGAAACTAGGCCTCGACATCTCACGAGGGATGCGGTACCTTCATTCTCAAGGAATACTACATAGAGATCTCAAATCAGAAAATCTTTTACTTGGTGAAGATATGTGTGTTAAGGTTGCAGATTTTGGTATCTCGTGCATAGAATCCCAGTGTGGAAGTGCAAAGGGATTCACCGGAACATACCGCTGGATGGCACCCGAAATGATCAAAGAAAAACATCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGACACCATTTGACAACATGACTCCTGAACAGGCAGCATTTGCAGTATGCCAAAAGAATGCAAGGCCCCCTCTACCTTCAGTGTGCCCTCCGGCATTTCGTCTCCTGATCAAGAGATGTTGGTCGAAAAATCCCAACAAGCGTCCACATTTTGATGAGATTGTTTCAATTTTAGAAACTTATATGGAGTCTTATAATGAAGATCCCAGTTTTTTCTATGATTACGTGCCATCATCTAAATATACTGCTTTACAGTGCTTACCGAAATGTATTACCAAACAATTGTCAGCTACCTTGAAGCCTAAGAATTCATCATCCTGA 1080 43.24 MRNLNWLKPISINGKAGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQMDVAIKLISQPEEDESLANFLENQFISEVALLFRLRHPNIITFIAACKKAPVFCIITEYMAGGSLRKYLHQQEPHSVPLDLVLKLGLDISRGMRYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCIESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSVCPPAFRLLIKRCWSKNPNKRPHFDEIVSILETYMESYNEDPSFFYDYVPSSKYTALQCLPKCITKQLSATLKPKNSSS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12067710 12071276 - Sed0018202.1 Sed01g1660 700964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1660 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1660 359 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1660 359 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1660 359 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1660 359 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1660 359 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1660 359 PANTHER SERINE-THREONINE PROTEIN KINASE 55 315 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed01g1660 359 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Sed01g1660 359 CDD STKc_MAP3K-like 66 311 - -
Sed01g1660 359 SMART serkin_6 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1660 359 Pfam Protein tyrosine and serine/threonine kinase 63 311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1660 359 Gene3D Transferase(Phosphotransferase) domain 1 140 346 - -
Sed01g1660 359 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Sed01g1660 359 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Sed01g1660 359 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1660 Sed-Chr1:12067710 Sed08g2503 Sed-Chr8:37827648 3.30E-191 dispersed
Sed03g2760 Sed-Chr3:44050777 Sed01g1660 Sed-Chr1:12067710 7.40E-78 transposed
Sed01g1660 Sed-Chr1:12067710 Sed08g2502 Sed-Chr8:37827648 3.30E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78618 PF07714 PK_Tyr_Ser-Thr 9.00E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1660 - - - 0.0