Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1661 ATGGCTATTCGAGGTGTCAATTTCAAATGGTATGATGGATTCTTCTTGTCGATGCTTGCTACTAGCATAATAATTGTGACTATCAATTGGAAGCGGTACAATACGTGTACATATCCGTTGCACATATGGATCGTGGTTGACTATACCTCTGTGTTTGCGTTTCGCCTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTGGATTTTGGATGGCAACAACAATATGCTCGGTTTTGTGGAAGAGTCGTGGTTCTTTCTATTCTCTCTATATTCCTCTACCCATTTTTATGTGCCTGGACCGTAATTGGAACTTTATGGTTTAGAGATGCTAAAGACTGTTTGCCCGAAGAAGGACAGAAATGGGGCTTCCTCATTTGGTTGCTTTTCAGCTACTGTGGCCTCCTCTGCATTTCTTGCATGACAGTGGGAAAGTGGCTAGAGCGTAGACAAGTACATTTGTTACGTGCCCAACAAGGCATACCTCTATCAGAATATGGGGTATTGGTTGATATGATTAGGGTTCCTGATTGGGCATTTGAAGCTGCAGGACTGGAAACACGAGGCATCGGTCAAGATGATACAGGTTACCATCCCGGGCTTTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAAGCTGAAAGCGGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCACAACTTCCACGTCGAATGTATTGATGAGTGGCTTCGTCTGAACGTCAAATGTCCTCGATGCCGCTCCTCAGTTTTCCCAAACCTCGACCTGAGCGCTCTTTCTAATCTGCGTTCGGACACTGAACAAACACCTGCCAATGGTTTTGTAACAAGCCAACCTCCAAGTCTGTTGAGATCTAGTCCAAGCCCCACCTCTCATACGGTAAATGGCATGATCCTCGATATTGACACTGTCTTAGACGCAGTGGAGAATGGGAGCTCACCCATGCCATCTGCTTCTCGACATTGA 1053 45.87 MAIRGVNFKWYDGFFLSMLATSIIIVTINWKRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQQYARFCGRVVVLSILSIFLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCGLLCISCMTVGKWLERRQVHLLRAQQGIPLSEYGVLVDMIRVPDWAFEAAGLETRGIGQDDTGYHPGLFLTSAQREAVEALIQELPKFKLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLRSDTEQTPANGFVTSQPPSLLRSSPSPTSHTVNGMILDIDTVLDAVENGSSPMPSASRH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12077670 12082646 - Sed0004154.1 Sed01g1661 700965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1661 350 SMART ring_2 235 275 IPR001841 -
Sed01g1661 350 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Sed01g1661 350 MobiDBLite consensus disorder prediction 296 319 - -
Sed01g1661 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 322 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Sed01g1661 350 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Sed01g1661 350 Pfam Ring finger domain 234 276 IPR001841 -
Sed01g1661 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Sed01g1661 350 SUPERFAMILY RING/U-box 216 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1661 Sed-Chr1:12077670 Sed12g1877 Sed-Chr12:29989243 1.10E-154 dispersed
Sed01g1661 Sed-Chr1:12077670 Sed01g1662 Sed-Chr1:12077670 4.60E-198 tandem
Sed01g1661 Sed-Chr1:12077670 Sed08g0132 Sed-Chr8:743362 9.20E-154 wgd
Sed01g1661 Sed-Chr1:12077670 Sed08g2501 Sed-Chr8:37819993 1.40E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1661 K16284 - csv:101222360 649.047