Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1661 | ATGGCTATTCGAGGTGTCAATTTCAAATGGTATGATGGATTCTTCTTGTCGATGCTTGCTACTAGCATAATAATTGTGACTATCAATTGGAAGCGGTACAATACGTGTACATATCCGTTGCACATATGGATCGTGGTTGACTATACCTCTGTGTTTGCGTTTCGCCTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTGGATTTTGGATGGCAACAACAATATGCTCGGTTTTGTGGAAGAGTCGTGGTTCTTTCTATTCTCTCTATATTCCTCTACCCATTTTTATGTGCCTGGACCGTAATTGGAACTTTATGGTTTAGAGATGCTAAAGACTGTTTGCCCGAAGAAGGACAGAAATGGGGCTTCCTCATTTGGTTGCTTTTCAGCTACTGTGGCCTCCTCTGCATTTCTTGCATGACAGTGGGAAAGTGGCTAGAGCGTAGACAAGTACATTTGTTACGTGCCCAACAAGGCATACCTCTATCAGAATATGGGGTATTGGTTGATATGATTAGGGTTCCTGATTGGGCATTTGAAGCTGCAGGACTGGAAACACGAGGCATCGGTCAAGATGATACAGGTTACCATCCCGGGCTTTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAAGCTGAAAGCGGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCACAACTTCCACGTCGAATGTATTGATGAGTGGCTTCGTCTGAACGTCAAATGTCCTCGATGCCGCTCCTCAGTTTTCCCAAACCTCGACCTGAGCGCTCTTTCTAATCTGCGTTCGGACACTGAACAAACACCTGCCAATGGTTTTGTAACAAGCCAACCTCCAAGTCTGTTGAGATCTAGTCCAAGCCCCACCTCTCATACGGTAAATGGCATGATCCTCGATATTGACACTGTCTTAGACGCAGTGGAGAATGGGAGCTCACCCATGCCATCTGCTTCTCGACATTGA | 1053 | 45.87 | MAIRGVNFKWYDGFFLSMLATSIIIVTINWKRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQQYARFCGRVVVLSILSIFLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCGLLCISCMTVGKWLERRQVHLLRAQQGIPLSEYGVLVDMIRVPDWAFEAAGLETRGIGQDDTGYHPGLFLTSAQREAVEALIQELPKFKLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLRSDTEQTPANGFVTSQPPSLLRSSPSPTSHTVNGMILDIDTVLDAVENGSSPMPSASRH | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12077670 | 12082646 | - | Sed0004154.1 | Sed01g1661 | 700965 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1661 | 350 | SMART | ring_2 | 235 | 275 | IPR001841 | - | |
Sed01g1661 | 350 | ProSiteProfiles | Zinc finger RING-type profile. | 235 | 276 | IPR001841 | - | |
Sed01g1661 | 350 | MobiDBLite | consensus disorder prediction | 296 | 319 | - | - | |
Sed01g1661 | 350 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 322 | IPR044793 | GO:0004842(InterPro)|GO:0010182(InterPro) | |
Sed01g1661 | 350 | FunFam | E3 ubiquitin-protein ligase SIS3 | 203 | 281 | - | - | |
Sed01g1661 | 350 | Pfam | Ring finger domain | 234 | 276 | IPR001841 | - | |
Sed01g1661 | 350 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 281 | IPR013083 | - | |
Sed01g1661 | 350 | SUPERFAMILY | RING/U-box | 216 | 284 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1661 | Sed-Chr1:12077670 | Sed12g1877 | Sed-Chr12:29989243 | 1.10E-154 | dispersed | |
Sed01g1661 | Sed-Chr1:12077670 | Sed01g1662 | Sed-Chr1:12077670 | 4.60E-198 | tandem | |
Sed01g1661 | Sed-Chr1:12077670 | Sed08g0132 | Sed-Chr8:743362 | 9.20E-154 | wgd | |
Sed01g1661 | Sed-Chr1:12077670 | Sed08g2501 | Sed-Chr8:37819993 | 1.40E-21 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1661 | K16284 | - | csv:101222360 | 649.047 |