Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1662 ATGAGGCTTCATTTTGTCTCTTCTTTTTCTTTAACTGTTTTGCTTGGTAGAATAATTGTGACTATCAATTGGAAGCGGTACAATACGTGTACATATCCGTTGCACATATGGATCGTGGTTGACTATACCTCTGTGTTTGCGTTTCGCCTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTGGATTTTGGATGGCAACAACAATATGCTCGGTTTTGTGGAAGAGTCGTGGTTCTTTCTATTCTCTCTATATTCCTCTACCCATTTTTATGTGCCTGGACCGTAATTGGAACTTTATGGTTTAGAGATGCTAAAGACTGTTTGCCCGAAGAAGGACAGAAATGGGGCTTCCTCATTTGGTTGCTTTTCAGCTACTGTGGCCTCCTCTGCATTTCTTGCATGACAGTGGGAAAGTGGCTAGAGCGTAGACAAGTACATTTGTTACGTGCCCAACAAGGCATACCTCTATCAGAATATGGGGTATTGGTTGATATGATTAGGGTTCCTGATTGGGCATTTGAAGCTGCAGGACTGGAAACACGAGGCATCGGTCAAGATGATACAGGTTACCATCCCGGGCTTTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAAGCTGAAAGCGGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCACAACTTCCACGTCGAATGTATTGATGAGTGGCTTCGTCTGAACGTCAAATGTCCTCGATGCCGCTCCTCAGTTTTCCCAAACCTCGACCTGAGCGCTCTTTCTAATCTGCGTTCGGACACTGAACAAACACCTGCCAATGGTTTTGTAACAAGCCAACCTCCAAGTCTGTTGAGATCTAGTCCAAGCCCCACCTCTCATACGGTAAATGGCATGATCCTCGATATTGACACTGTCTTAGACGCAGTGGAGAATGGGAGCTCACCCATGCCATCTGCTTCTCGACATTGA 1035 45.7 MRLHFVSSFSLTVLLGRIIVTINWKRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQQYARFCGRVVVLSILSIFLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCGLLCISCMTVGKWLERRQVHLLRAQQGIPLSEYGVLVDMIRVPDWAFEAAGLETRGIGQDDTGYHPGLFLTSAQREAVEALIQELPKFKLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLRSDTEQTPANGFVTSQPPSLLRSSPSPTSHTVNGMILDIDTVLDAVENGSSPMPSASRH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12077670 12082646 - Sed0004154.2 Sed01g1662 700966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1662 344 ProSiteProfiles Zinc finger RING-type profile. 229 270 IPR001841 -
Sed01g1662 344 SMART ring_2 229 269 IPR001841 -
Sed01g1662 344 FunFam E3 ubiquitin-protein ligase SIS3 197 275 - -
Sed01g1662 344 MobiDBLite consensus disorder prediction 290 313 - -
Sed01g1662 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 8 316 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Sed01g1662 344 Pfam Ring finger domain 228 270 IPR001841 -
Sed01g1662 344 SUPERFAMILY RING/U-box 210 278 - -
Sed01g1662 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 275 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1662 Sed-Chr1:12077670 Sed12g1877 Sed-Chr12:29989243 1.00E-141 dispersed
Sed01g1661 Sed-Chr1:12077670 Sed01g1662 Sed-Chr1:12077670 4.60E-198 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1662 K16284 - csv:101222360 604.364