Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1683 ATGGTCGGCCATGGCAATCACAGGTTGAAATTCTCAATATTCAACCATCACAGATCATCATCTTCATCATCATCAGACTCTAAACCCCAACAACCACCCCCAGAAGAGTATCCAGAAGAGTACCTCTGCGCAATATCCAAGTCCTTAATGGCGGATCCGGTCGTCGTCTCCTCCGGCCACACCTTCGAGCGGATCGCCGTGCAAGTCTGTCACGATTTGGGGTTCTCGCCCAAGCTCGACGACGGCTCACCCGCAGATTTCTCCTCTGTAATCACAAACAGAAACATGAAATTCACAATCCAAAAATGGTGCGACAACAACAGAATCCAGCACCCACAGCCGCCGGATTACGAGCAAATTGAACTAATCGTTCGTCGGTTAATGGACAAAGAGAGACAGCAGAATCGATTCCAGTCTTCCGACAGCGAGTTGTTGAGAAACGTCGCCGATCAACGCCCCGGAGTTCCGGTGCACGCGGCGACGGAGTTTGGCCTGAGACTCAACCGGTTTCCACTAAACTCGTCGCCGCAGACGGAGGAGGTCGTGAGTGAAAGTACTCTTTTACCCTTCAAAACGCAACCGGCTTGTTACGCTGCTCAACCTTCTTCTTCTTCCAATAGAAGTTTCGATTCGTATTCCCCAAATTCAGAAGAAAAAACTAAAATCATCTCCAAATTCAGAAGCGTGAAGGAATTAGAACAACAAGAAGGAGTGATTTACCTGAGAAAATTGACGAAATCAGACGAATCGATTAGGGTTTCGTTATGCACCAAGGAATTACTCGCCGCTTTACTTCCTCTGATTTCGTCCAGATCTGTAAACATCCAAATCAACGCCGTCGCCTCCGTCGTGAATCTCTCGTTAGACAAATCCAACAAACTGAAGATCGTAAGAGCCGGATTCGTTCCGCCGTTAATCGACGTTCTGGACGGCGGATCCGCCGAATCTCAAGAACACGCCACCGGCGCGTTGTTCAGTTTATCGTTAGACGACGAGAACAAGATGGCGATCGGAATCCTCGGCGCGTTGCCGGTGTTGATGAACTCGCTCAGATCGGAGAGTGAACGGATGAGGAACGACTCGGCGCTTTGTTTGTATCACCTGACTCTAAACCCTAGCAACCGAGTCAAACTCGTGAAACTCGGCGCCGTTCCGATTCTCCTCTCGTTGACGAGAATCGACGGCTCTGCGAGCCGGATCTTGCTGATTCTCTGCAACATCGCCGTCTGTGCGGACGGGAGATCGGCGATGCTGGATGCGAACGCGGTGGAGTGTTTGGTCGGAATGTTGAAGGAGAAGGAAATGGATTCTGAGTCAACTCGGGAGAATTGTGTGGTGGCGCTTCACGCGCTGAGTCAGGGCGGTTTCCGATTCAGGGGATTGGCGACGGCGGCCGGCGCGGTGGAGGTTTTGCGAGAGGTTGAAGAAAGGGGAAGTGAGAGAGCGAGAGAGAAGGCTAAGAGAATCTTGTTGATGATGCGAACCGGTGGAAGCGGTTCGGTTGAGGTTAATGGGGTCGGCCGCCATGGGCTTGATACTAGTGGGGTTAGCTGGACCGGACGGGTTGGGGCGGCTGGTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA 1617 51.58 MVGHGNHRLKFSIFNHHRSSSSSSSDSKPQQPPPEEYPEEYLCAISKSLMADPVVVSSGHTFERIAVQVCHDLGFSPKLDDGSPADFSSVITNRNMKFTIQKWCDNNRIQHPQPPDYEQIELIVRRLMDKERQQNRFQSSDSELLRNVADQRPGVPVHAATEFGLRLNRFPLNSSPQTEEVVSESTLLPFKTQPACYAAQPSSSSNRSFDSYSPNSEEKTKIISKFRSVKELEQQEGVIYLRKLTKSDESIRVSLCTKELLAALLPLISSRSVNIQINAVASVVNLSLDKSNKLKIVRAGFVPPLIDVLDGGSAESQEHATGALFSLSLDDENKMAIGILGALPVLMNSLRSESERMRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIDGSASRILLILCNIAVCADGRSAMLDANAVECLVGMLKEKEMDSESTRENCVVALHALSQGGFRFRGLATAAGAVEVLREVEERGSERAREKAKRILLMMRTGGSGSVEVNGVGRHGLDTSGVSWTGRVGAAGGLNRYSTNTTKF 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12197376 12199590 - Sed0002427.1 Sed01g1683 700987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1683 538 SUPERFAMILY RING/U-box 31 114 - -
Sed01g1683 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 337 IPR000225 GO:0005515(InterPro)
Sed01g1683 538 SMART arm_5 371 409 IPR000225 GO:0005515(InterPro)
Sed01g1683 538 SMART arm_5 289 329 IPR000225 GO:0005515(InterPro)
Sed01g1683 538 SMART arm_5 410 453 IPR000225 GO:0005515(InterPro)
Sed01g1683 538 SMART arm_5 330 370 IPR000225 GO:0005515(InterPro)
Sed01g1683 538 PANTHER U BOX DOMAIN-CONTAINING 16 495 - -
Sed01g1683 538 Gene3D - 220 339 IPR011989 -
Sed01g1683 538 Gene3D - 340 398 IPR011989 -
Sed01g1683 538 MobiDBLite consensus disorder prediction 15 37 - -
Sed01g1683 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 114 IPR013083 -
Sed01g1683 538 SUPERFAMILY ARM repeat 226 493 IPR016024 -
Sed01g1683 538 MobiDBLite consensus disorder prediction 15 30 - -
Sed01g1683 538 SMART Ubox_2 40 103 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g1683 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 259 301 IPR000225 GO:0005515(InterPro)
Sed01g1683 538 Pfam U-box domain 38 108 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g1683 538 ProSiteProfiles U-box domain profile. 36 110 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g1683 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515(InterPro)
Sed01g1683 538 Gene3D - 399 496 IPR011989 -
Sed01g1683 538 Pfam Armadillo/beta-catenin-like repeat 291 328 IPR000225 GO:0005515(InterPro)
Sed01g1683 538 Pfam Armadillo/beta-catenin-like repeat 330 369 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1683 Sed-Chr1:12197376 Sed12g1903 Sed-Chr12:30199477 8.40E-90 dispersed
Sed01g1683 Sed-Chr1:12197376 Sed13g1382 Sed-Chr13:19282203 6.80E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1683 - - - 0.0