Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1687 ATGGCCGCTCCGCCATCCTCTTCTGCCTTACCGGACTCTTCTTCTTCCCGGCACCATGCTTATAGTAGGAAGCAGAAATCGCTTGGTCTCTTATGCTCAAATTTCTTGAGCTTGTATAACGACGATGAAGTTCACTCGATTGGGCTCGATGATGCCGCGTCGCGATTAGGTGTTGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGCGTTGGGGTTCTGTCTAGAAAGGCGAAGAATCAGTACAATTGGAATGGATTTGGCGCAATCCCTAAGGCCTTACATGATCTTAAGGAGGAGGGTTTGAAAGAGAATTGCGGTGCTAACGATTATGCAAAAGCCTCGGATGATGAAGATGACGACGAAAGATTTTCTAATCCTACTGGAAGCCAGAACTCCACTGCCACTGTGCCCAAATATTCATCTTCTTTAAAATCGGACAATAGGAGGGAAAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGCTATTTATTTGCGGTCATATGAATATGATTTCCCTCGATGAAGCTGCAAGACTCTTATTAGGAGATGGCCACAATTCATCAGTTATGAGAACAAAGGTGAGGCGGCTATATGACATTGCAAATGTGCTGTCTTCCATGAATCTTATTGAAAAGACCCATACAACTGACACAAGAAAGCCTGCATTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGACGGAGCCTATCGATCTTCCACAGTCCAGAAAAAGGGCATTTGGAACTGACGTGACAAATGTAAGTTATAAGAAGATTAAGGCTGAAAATTCAGCTTATTGCCTCAACCAGAAGCTAGTGCAGTGCGACAATTCTTCGCAAGAGGACAGCCAAAACAGTCGGGATCAGGAATGTGAACGAACATCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTTACAGTAGCTAAAGTTGGTGTCTCGGGAAATAACAATGTGAACCAGTCTCACGATTGGGAAGGCCTTTCCTCAACATTCCGTCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGGAACCTATACAAATATCTTGA 1116 43.91 MAAPPSSSALPDSSSSRHHAYSRKQKSLGLLCSNFLSLYNDDEVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYNWNGFGAIPKALHDLKEEGLKENCGANDYAKASDDEDDDERFSNPTGSQNSTATVPKYSSSLKSDNRREKSLALLTQNFVKLFICGHMNMISLDEAARLLLGDGHNSSVMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKTEPIDLPQSRKRAFGTDVTNVSYKKIKAENSAYCLNQKLVQCDNSSQEDSQNSRDQECERTSKSYQFGPFAPVTVAKVGVSGNNNVNQSHDWEGLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKEPIQIS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12242894 12246380 - Sed0017751.1 Sed01g1687 700991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1687 371 SMART E2F_TDP_2 151 231 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g1687 371 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g1687 371 Gene3D - 146 233 IPR036388 -
Sed01g1687 371 Gene3D - 18 91 IPR036388 -
Sed01g1687 371 FunFam E2F transcription factor-like E2FE 146 233 - -
Sed01g1687 371 MobiDBLite consensus disorder prediction 110 148 - -
Sed01g1687 371 MobiDBLite consensus disorder prediction 128 145 - -
Sed01g1687 371 FunFam E2F transcription factor 8 18 90 - -
Sed01g1687 371 SUPERFAMILY Winged helix DNA-binding domain 153 232 IPR036390 -
Sed01g1687 371 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Sed01g1687 371 PANTHER TRANSCRIPTION FACTOR E2F 7 346 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed01g1687 371 Pfam E2F/DP family winged-helix DNA-binding domain 152 231 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g1687 371 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1687 Sed-Chr1:12242894 Sed08g2542 Sed-Chr8:38087592 7.40E-186 dispersed
Sed01g1687 Sed-Chr1:12242894 Sed08g2541 Sed-Chr8:38087135 4.30E-170 wgd
Sed01g1687 Sed-Chr1:12242894 Sed08g0171 Sed-Chr8:940256 6.00E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37213 PF02319 E2F_TDP 1.10E-19 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1687 K09391 - csv:101219210 637.106