Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1687 ATGGCCGCTCCGCCATCCTCTTCTGCCTTACCGGACTCTTCTTCTTCCCGGCACCATGCTTATAGTAGGAAGCAGAAATCGCTTGGTCTCTTATGCTCAAATTTCTTGAGCTTGTATAACGACGATGAAGTTCACTCGATTGGGCTCGATGATGCCGCGTCGCGATTAGGTGTTGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGCGTTGGGGTTCTGTCTAGAAAGGCGAAGAATCAGTACAATTGGAATGGATTTGGCGCAATCCCTAAGGCCTTACATGATCTTAAGGAGGAGGGTTTGAAAGAGAATTGCGGTGCTAACGATTATGCAAAAGCCTCGGATGATGAAGATGACGACGAAAGATTTTCTAATCCTACTGGAAGCCAGAACTCCACTGCCACTGTGCCCAAATATTCATCTTCTTTAAAATCGGACAATAGGAGGGAAAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGCTATTTATTTGCGGTCATATGAATATGATTTCCCTCGATGAAGCTGCAAGACTCTTATTAGGAGATGGCCACAATTCATCAGTTATGAGAACAAAGGTGAGGCGGCTATATGACATTGCAAATGTGCTGTCTTCCATGAATCTTATTGAAAAGACCCATACAACTGACACAAGAAAGCCTGCATTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGACGGAGCCTATCGATCTTCCACAGTCCAGAAAAAGGGCATTTGGAACTGACGTGACAAATGTAAGTTATAAGAAGATTAAGGCTGAAAATTCAGCTTATTGCCTCAACCAGAAGCTAGTGCAGTGCGACAATTCTTCGCAAGAGGACAGCCAAAACAGTCGGGATCAGGAATGTGAACGAACATCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTTACAGTAGCTAAAGTTGGTGTCTCGGGAAATAACAATGTGAACCAGTCTCACGATTGGGAAGGCCTTTCCTCAACATTCCGTCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGGAACCTATACAAATATCTTGA 1116 43.91 MAAPPSSSALPDSSSSRHHAYSRKQKSLGLLCSNFLSLYNDDEVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYNWNGFGAIPKALHDLKEEGLKENCGANDYAKASDDEDDDERFSNPTGSQNSTATVPKYSSSLKSDNRREKSLALLTQNFVKLFICGHMNMISLDEAARLLLGDGHNSSVMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKTEPIDLPQSRKRAFGTDVTNVSYKKIKAENSAYCLNQKLVQCDNSSQEDSQNSRDQECERTSKSYQFGPFAPVTVAKVGVSGNNNVNQSHDWEGLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKEPIQIS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12242894 12246380 - Sed0017751.1 Sed01g1687 700991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1687 371 SMART E2F_TDP_2 151 231 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g1687 371 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g1687 371 Gene3D - 146 233 IPR036388 -
Sed01g1687 371 Gene3D - 18 91 IPR036388 -
Sed01g1687 371 FunFam E2F transcription factor-like E2FE 146 233 - -
Sed01g1687 371 MobiDBLite consensus disorder prediction 110 148 - -
Sed01g1687 371 MobiDBLite consensus disorder prediction 128 145 - -
Sed01g1687 371 FunFam E2F transcription factor 8 18 90 - -
Sed01g1687 371 SUPERFAMILY Winged helix DNA-binding domain 153 232 IPR036390 -
Sed01g1687 371 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Sed01g1687 371 PANTHER TRANSCRIPTION FACTOR E2F 7 346 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed01g1687 371 Pfam E2F/DP family winged-helix DNA-binding domain 152 231 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g1687 371 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1687 K09391 - - csv:101219210 637.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1687 Sed-Chr1:12242894 Sed08g2542 Sed-Chr8:38087592 7.40E-186 dispersed
Sed01g1687 Sed-Chr1:12242894 Sed08g2541 Sed-Chr8:38087135 4.30E-170 wgd
Sed01g1687 Sed-Chr1:12242894 Sed08g0171 Sed-Chr8:940256 6.00E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37213 PF02319 E2F_TDP 1.10E-19 CL0123 Sed TF