Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1691 ATGAGGCTCTCAGCTGCTGGTTTTAGTCCTCAAGCTCCTGAAGGTGAAAGGAGGGTCCTGAATTCTGAGCTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTCTCCCGGCTGTTGGCAGTCGTGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAACAGAGAGGTGGATGCCCAGATCCCGAATTATCCGAGTTTACCGCCGCAGCTCATATGTCAACTTCACAATTTGACAATGCATGCAGATGCTGAGACTGATGAAGTATATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCTTATCTTCCAGCCGAGTTGGGAACTCCAAGTAGGCAGCCAACCAATTACTTTTGCAAAACTTTGACTGCCAGTGATACCAGCACGCATGGAGGCTTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTTTTCCCCCCTTTGGACTTCTCCATGCAGCCTCCAGCCCAAGAGCTGATTGCAAGGGACCTACATGAGAATGAATGGAAATTTAGACATATATTTCGTGGCCAGCCTAAACGACACCTTCTTACAACTGGATGGAGTGTCTTTGTGAGCTCTAAAAGACTCGTTGCTGGTGATGCTGTGCTTTTTATCTGGAATGAAAAGAACCAATTACTCCTTGGAATTAGACGTGCAAGTCGACCACAAACCGTGCTGCCTTCATCTGTTTTGTCGAGTGATAGCATGCACTTAGGACTCCTTGCTGCTGCAGCTCATGCAGCTGCTACCAATAGTAGATTTACCATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTCGGGATGCGCTTTAGGATGCTGTTTGAAACAGAAGAATCAAGTGTTCGCCGCTACATGGGAACAATCACTGGCATTAGTGACTTAGATCCTGTTAAATGGCAAAGTTCACATTGGCGCTCTGTCAAGGTTGGCTGGGACGAGTCAACGGCAGGTGAGCGGCAGCCAAGAGTGTCCTTATGGGAAATTGAACCCTTGACAACATTTCCAATGTATCCATCACCATTTCCACTTCGGCTGAAGCGACCATGGCCAACTGGATTGCCTTCTTTTGGCGTCAAGGATAGTGACCTCGGCATGAATTCTCCATTCATGTGGCTACGTGGAGATAATGGCGATCGCGGCATCCAATGTCTAAACTTTCAGGGAAATGGGGTCTCACCATGGATGCAGCCGAGGCTTGATACGTCTATGATTGGTATGCAACCTGATTTGTATCAAGCCATGGCTGCTGCAGCTCTTCAGGAGATGAGGGCGATGGATTATTCCAAAATATCACCTGCATCTATTCTACAATTCCAGCAGCCCCAAGGTCTCCCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCACGCCTTTCTGCAACCCATTCAAGAACATCAGCAGCATTCTCAGTCTCAGCCTCAGCCTCAGCCTCAGCCTCAGTCTCAGTCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAAACTCAGCCACACCATCTTCAGCCACAATTGCAGCCCCAGCAGTCGTTCAATAATCAACAGCAGCTGCATCAACAGCAACCAAGGCAGCCACAGCCATTGGTCGATCATCAACCGATTCCTTGTACAATCCCTGCTATATCTCAGTTTGCTTCTTGTTCACAATCCCAGTCACCATCCCTTCAAACCGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCTAATGGTAACCCCGTAACTAGTCCTACTGCTTTCCCATTCCATAGCCTTGCAGGGTCATTTGTCCGTGATGAACCGTCTCAGCTGCTTAATCTTCAAAGAGCAAATTCTGTAATTCCTTCAGCTGGCTGGCCATCAAAGAGAGCTGCTATTGATCCTCTCTCTACTGGAACTTCTCAGTATTTTTTACCTCAAGTGGAAAATTTGGGAACATCACAGAGTAGTATTTCTCAGAATACAGTTGCATTGCCACCCTTCCCTGGAAGAGAGTGTTCCATTGATAATCGAGACGAGGGTTCTGATCCTCAAAACCATGTTTTATTTGGTGTGAATATCGAGTCTTCATCTCTTCTAATGCAGAATGGGATGTCAAACCTTAGGGGAGTCGGCAACGATAGTGTTTCTACAACTCTACCTTTCTCTTCCAACTATATGAGCACTGTTGGTACCGATTTTTCTGTAAATCCAACCATGACGTCCTCAAATTGCCTTGATGAGTCGGGTTTCCTGCAATCTCATGAAAATGTAGGCCAAGAAAACCAATCGAACGGAACTTTTGTCAAGGTTCATAAATCGGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAACTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGTGAGTTGGAGGATCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAACGACGTTCTTCTCCTTGGGGATGGACCATGGCCGGAGTTTGTAAGCAGTGTATGGTGTATCAGAATACTTTCACCAGAAGAAGTTCAAGAAATGGGAAAACAAGGTTTTGAACTTCTCAACTCTGTGCCAATCCAGAGGCTCTCGAACAGCACCTGTGACAACTATGGTAGCCGACAGGACTCGAGAAATTTGATTTCAGGGATAACCTCTGTCGGGGCTCTCGATTACTGA 2832 47.46 MRLSAAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNREVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSSKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVLPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWQSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGVKDSDLGMNSPFMWLRGDNGDRGIQCLNFQGNGVSPWMQPRLDTSMIGMQPDLYQAMAAAALQEMRAMDYSKISPASILQFQQPQGLPCQSSTLMQPQMLHQSQPQHAFLQPIQEHQQHSQSQPQPQPQPQSQSQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQTQPHHLQPQLQPQQSFNNQQQLHQQQPRQPQPLVDHQPIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTAFPFHSLAGSFVRDEPSQLLNLQRANSVIPSAGWPSKRAAIDPLSTGTSQYFLPQVENLGTSQSSISQNTVALPPFPGRECSIDNRDEGSDPQNHVLFGVNIESSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTVGTDFSVNPTMTSSNCLDESGFLQSHENVGQENQSNGTFVKVHKSGTYSRSLDITKFNNYPELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVSSVWCIRILSPEEVQEMGKQGFELLNSVPIQRLSNSTCDNYGSRQDSRNLISGITSVGALDY 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12293061 12299116 + Sed0002310.1 Sed01g1691 700995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1691 943 MobiDBLite consensus disorder prediction 547 591 - -
Sed01g1691 943 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Sed01g1691 943 FunFam Auxin response factor 291 363 - -
Sed01g1691 943 ProSiteProfiles PB1 domain profile. 810 894 IPR053793 -
Sed01g1691 943 FunFam Auxin response factor 805 899 - -
Sed01g1691 943 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g1691 943 Gene3D - 125 228 IPR015300 -
Sed01g1691 943 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Sed01g1691 943 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 902 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed01g1691 943 FunFam Auxin response factor 125 229 - -
Sed01g1691 943 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Sed01g1691 943 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677(InterPro)
Sed01g1691 943 SUPERFAMILY CAD & PB1 domains 800 887 - -
Sed01g1691 943 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Sed01g1691 943 Gene3D - 806 899 - -
Sed01g1691 943 Gene3D - 291 363 - -
Sed01g1691 943 MobiDBLite consensus disorder prediction 547 584 - -
Sed01g1691 943 MobiDBLite consensus disorder prediction 498 527 - -
Sed01g1691 943 Pfam AUX/IAA family 799 896 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1691 Sed-Chr1:12293061 Sed14g1598 Sed-Chr14:24132416 0.00E+00 dispersed
Sed01g1691 Sed-Chr1:12293061 Sed08g2648 Sed-Chr8:38656979 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37214 PF02309 AUX_IAA 1.10E-07 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1691 K14486 - csv:101211705 959.903