Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1700 ATGGACGGCGGCGTTGGGCGGTTGAAGGCGGCGAGTTTGAGCAATGGTGGTAAAACCCGCGTTGGGAAATACGAGTTGGGTAGAACCCTAGGCGAGGGCAACTTCGCCAAGGTCAAGTTTGCTCGGAATTTGGAGACCGGCGACCATGTGGCGATCAAAATTCTCGACAAGGAGAAGGTTCTTAAGCACAAGATGATCGGTCAGATTAAACGCGAGATATCTACGATGAAATTAATTAGGCATCCAAATGTCATCCGTATGTTCGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGAGAACTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAGGCAAGAAAGTATTTTCAACAGCTTATTAATGCGGTGGATTATTGTCATAGCAGAGGCGTTTTTCATAGAGACCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGCTCTTAAAGTTTCAGACTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTCCACACGACATGTGGAACACCAAATTATGTCGCTCCGGAGGTGATCAATGACAAAGGCTATGATGGGGCAAAGGCTGATTTGTGGTCATGTGGTGTTATTCTTTTTGTCTTGATGGCTGGTTATTTACCTTTTGAAGATTCCAACCTGGTTGTGCTGTATAAGAAGATACACAAGGCTGATTTCACTTGTCCACCATGGTTCTCAACAAACGTGAAGAAACTAATCGCAAGAATTTTGGATCCCAATCCCTCAACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAGGGCTATAAGCCGCCCACTTTTGAACAAGCTGATGTTAGTTTTGTTGATGTAGATTCTATCTTCGATAACACAGGGGATTCGAGTAGTCTTGTTGTGGAAAGGAAAGAGGGACGTACTGCCCCTCTTACGATGAATGCATTTGAGCTTATCTCTAAATCTCAAGGCCTCAATCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAACGGGAAACAAGGTTCACATCGAATCGACCTGCTAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAACACCTTTGGGTTTTGGTGTGAAGAAAAATAACTACAAGTTGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCATTATACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACTTTAGAATTTCACAAGGTAGGATCACCACCAGTGTACTCTTGTTATCCAAGAGAGCTAAAACATTTCTGA 1344 42.71 MDGGVGRLKAASLSNGGKTRVGKYELGRTLGEGNFAKVKFARNLETGDHVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGALKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVVLYKKIHKADFTCPPWFSTNVKKLIARILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADVSFVDVDSIFDNTGDSSSLVVERKEGRTAPLTMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETATPLGFGVKKNNYKLKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKVGSPPVYSCYPRELKHF 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12347214 12355470 - Sed0018703.2 Sed01g1700 701004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1700 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 17 429 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed01g1700 447 CDD STKc_SnRK3 23 278 - -
Sed01g1700 447 FunFam Non-specific serine/threonine protein kinase 17 319 - -
Sed01g1700 447 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1700 447 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Sed01g1700 447 CDD CIPK_C 326 431 - -
Sed01g1700 447 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Sed01g1700 447 FunFam Non-specific serine/threonine protein kinase 319 445 - -
Sed01g1700 447 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1700 447 Pfam NAF domain 322 382 IPR004041 GO:0007165(InterPro)
Sed01g1700 447 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Sed01g1700 447 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Sed01g1700 447 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1700 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1700 447 Gene3D Kinase associated domain 1, KA1 320 445 - -
Sed01g1700 447 ProSiteProfiles NAF domain profile. 320 344 IPR018451 GO:0007165(InterPro)
Sed01g1700 447 SUPERFAMILY Protein kinase-like (PK-like) 21 312 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1700 Sed-Chr1:12347214 Sed08g2652 Sed-Chr8:38683291 2.90E-229 dispersed
Sed01g1699 Sed-Chr1:12347214 Sed01g1700 Sed-Chr1:12347214 1.10E-247 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78620 PF00069 Pkinase 1.60E-73 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1700 - - - 0.0