Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1713 ATGGAATCCGATAAGGTTAAAGGGGTCGTCATCATCACTCTTCCGCCGCCGGATAATCCATCGCTGGGTAAATCCATCACTGCAATCACACTCTCCGACGACGACTTCCCGGAACCTCCTCGCGAATCCGCCGCCGTTCCTCGAGAAATCCAACAACCAAACCCTAACGATTTGACTCTTCCGATTGAAGTCCCTTCGAATCAGAGGAGTATCCCGTCGTCGAGGGAACTCTTCGCCGGTACTCCCAGGAAGCTCGTTATCTTATTGGGTATTGCTCTTGTTGCTGTTTATCTTTATGCTTCCAATTTCCCGGAGACCCTTCAGGAGCTGCGGAGTCCAGAGAAGAACGACGAGGATCGCTCTAAATCCTTGCTGTTTCCTCTTTATTTCCAGTCCAAATTGGGTGATTTCAGTGATTTTCAGCTTAGGTTGGGAAGGACTGTGGGTGTAAATAAGGACAATCTTGTTGCGACCCTTATTGATGCGGCTGGAGTTCATAAGCCAACCAAATTGATTTCTTCTACTTCGAAATCTGATTCATCACCAGTTTTTCCTGTGTGGGGAGATATCTATCCAGATGGATTTTATTATACTTACATCCTGGTTGGAGAGCCACCGAGACGTTACTTCCTCGATATTGATACTGGAAGTGATTTGACATGGATTCAGTGTGATGCTCCATGCACCAGTTGTGGCAAGGGAAGGAATCCATTATACAAGCCTAGAAAAGACAATGTTGTATCTTTCAAGGACTCTTTGTGCATGGAAGTTCAGAGAAATCATGATGGCGATCAGTGTGTAACCTGCCATCAGTGTGACTACGAGATTCAATATGCTGACCAGAGCTCCTCTCTTGGGGTTCTTGTTAAAGATGAGTTCACCTTAAAGTTTGTCAATGGATCATCGACCAAGTTGAATGTCATTTTCGGGTGTGCATATGATCAGCAAGGCATACTATTGAACACTTTGTTGAAGACTGATGGTATTTTGGGACTAAGCAGGGCTAAAGTTAGCTTTCCTTCCCAGTTGGCAAGTCAAGGGATCATAAACAATGTGGTAGGTCACTGTCTTACCGGTGATCCAGCAGGTGGTGGATATATGTTTTTAGGTGATGATTTTGTGCCACAATGGGGAATGGCATGGGTTGCCATGCTTAACAGCCCTTCCATAGATTTTTATCAAACTAAGGTAGTAGGAATAGATTATGGAAGCAGTTCACTGACTCTTGATACTTGGGGTAGCAACCAAGAGCGAGTAGTCTTCGATAGTGGCAGCTCCTACACATACTTCACAAAAGAAGCATATTCCCAATTGGTTGCATCTCTTGAAGAACTCTCGGTGTTTGGGCTTATTATTATTCAAGACTCATCAGAAACCATCTGTTGGAAAACTAAATCTTTTATCAGATCTGTTAAAGAGGTCAAGCAGTTCTTCAAGCCTTTAACACTTCAGTTCGAGAGCAGATTTTGGATTATGCCCATGAAACTTGAGATTCCTCCAGAGAATTACTTAGTAATCAATAAAGAAGGAAATGTATGCTTGGGAATTTTTAACGGAAGCCAGGTGCAAGATGAGTCCACAATCATTCTTGGAGACAACGCATTGCGTGGGAAATTGGTCGTTTATGATAACGTGAATCAGAGAATTGGATGGACTTCATCCGACTGCCACAAGCCAAGAAGAACTAAACGCTTCCCATTCTTTTGA 1707 43.59 MESDKVKGVVIITLPPPDNPSLGKSITAITLSDDDFPEPPRESAAVPREIQQPNPNDLTLPIEVPSNQRSIPSSRELFAGTPRKLVILLGIALVAVYLYASNFPETLQELRSPEKNDEDRSKSLLFPLYFQSKLGDFSDFQLRLGRTVGVNKDNLVATLIDAAGVHKPTKLISSTSKSDSSPVFPVWGDIYPDGFYYTYILVGEPPRRYFLDIDTGSDLTWIQCDAPCTSCGKGRNPLYKPRKDNVVSFKDSLCMEVQRNHDGDQCVTCHQCDYEIQYADQSSSLGVLVKDEFTLKFVNGSSTKLNVIFGCAYDQQGILLNTLLKTDGILGLSRAKVSFPSQLASQGIINNVVGHCLTGDPAGGGYMFLGDDFVPQWGMAWVAMLNSPSIDFYQTKVVGIDYGSSSLTLDTWGSNQERVVFDSGSSYTYFTKEAYSQLVASLEELSVFGLIIIQDSSETICWKTKSFIRSVKEVKQFFKPLTLQFESRFWIMPMKLEIPPENYLVINKEGNVCLGIFNGSQVQDESTIILGDNALRGKLVVYDNVNQRIGWTSSDCHKPRRTKRFPFF 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12458848 12469769 + Sed0007266.1 Sed01g1713 701017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1713 568 SUPERFAMILY Acid proteases 190 557 IPR021109 -
Sed01g1713 568 Pfam Xylanase inhibitor C-terminal 393 552 IPR032799 -
Sed01g1713 568 Gene3D Acid Proteases 376 557 IPR021109 -
Sed01g1713 568 PANTHER ASPARTYL PROTEASES 153 556 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g1713 568 MobiDBLite consensus disorder prediction 32 57 - -
Sed01g1713 568 ProSiteProfiles Peptidase family A1 domain profile. 196 552 IPR033121 -
Sed01g1713 568 Gene3D Acid Proteases 171 371 IPR021109 -
Sed01g1713 568 Pfam Xylanase inhibitor N-terminal 196 371 IPR032861 -
Sed01g1713 568 PRINTS Pepsin (A1) aspartic protease family signature 528 543 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g1713 568 PRINTS Pepsin (A1) aspartic protease family signature 202 222 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g1713 568 PRINTS Pepsin (A1) aspartic protease family signature 419 430 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed01g1713 568 FunFam Aspartyl protease family protein 172 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1713 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1713 Sed-Chr1:12458848 Sed03g0772 Sed-Chr3:4653572 8.30E-80 dispersed
Sed01g1710 Sed-Chr1:12443507 Sed01g1713 Sed-Chr1:12458848 1.20E-23 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g339 . . . . . Bpe13g00343 Bma06g00033 . Cmo13g01071 . . . . . . Cpe20g00114 . . . . . . . . . . . . . . . Cone2ag0698 . . . Lsi02g00172 Csa01g00655 Chy12g01445 Cme12g01885 . . . . . . . . Sed01g1713 . . Cma13g01031 . Car13g00865 . . . Bhi08g01222 Tan05g2279 Cmetu12g0397 Lac10g0224 Hepe07g2405 . . Cla04g01102 Cam04g1155 Cec01g1665 Cco01g1711 Clacu04g1182 Cmu04g1162 Cre01g1460 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012585 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28