Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1725 ATGCTTTCGATGGGGCTTTTGTGTTCTCTCTGCGCCTGCTTGGAGAAAAGGTTCAAAGCCGCTGATCCAGCCGGCGACGATGATGAAGATGTGTCTTCGGACATCTTTTTTGGCCTCAATGCGCTGCAAATCGCCACTAATTTCTTTTCCGAGGCCAATAAGCTCGGCCATGGAGGGTTTGGACCGGTCTACAAGGGGTTGATGCCAAATAGTCAACAGGTAGCAGTCAAGAAGCTGTCGGTAGATTCGAGACAAGGAGTGAAGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACAGAAATTTAGTCGTTTTACTAGGCTGTTGTATAGAAGGACCTGAAAAGATGCTTGTATATGAGTACCTGCCAAACCGAAGCCTCGACTACTTTCTTTTTGATAAAAGGAAGTCCCCATCCCTGGATTGGACAACACGATTCCATATAATTACAAATGTAGTGAAAGGTCTTCTCTACTTGCATGAAGAGGCTCCTGCAAGGATAATACATAGAGATATCAAAGCCAGTAACATATTACTAGATGAGCAATTGAATCCAAAAATCTCAGATTTCGGACTAGCGCGACTTTTTCCTGGGGATGACACACATTTGAATACATTTAAGATCGCTGGTACTTATGGCTATATGGCTCCTGAATATGCACTTCGTGGATATTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGCATCTTAGTACTAGAGATCGTTAGTGGAAGAAAAAATCACGAGAAAGAGCTCGGTGTACAAAAGGCTGACCTCTTGGGATATGCATGGTCACTGTACCAAGAAGGGAAGATTTTAGAACTAGTTGACCAAAGCCTAACAAAGTGCAATGCAGATGAGGCAGCTATGTGCATTCAATTGGGTTTGCTATGTTGTCAAGCGAGTGTTGCAGATAGGCCTGATATGAATACCATTCATCTCATGCTTTCAAGTGATTCGTTCACGTTGCCACGACCCGGGAAACCTGGACTTCTCGGTCGAGGAGCACGTAGGACGACTACCTCTACTTCAGCTTTCACCAATACAAATACTGCTAGTACACAAACTTGCGTTACCAGAGTTTCTGCAGGTAGTAATAGTTTAGTAGAGGACTATTCAAGAAATTCCATATCTGTTTCTTCTATTGATGAAGGCAGGTGA 1170 43.08 MLSMGLLCSLCACLEKRFKAADPAGDDDEDVSSDIFFGLNALQIATNFFSEANKLGHGGFGPVYKGLMPNSQQVAVKKLSVDSRQGVKQFSNEVKLLLRIQHRNLVVLLGCCIEGPEKMLVYEYLPNRSLDYFLFDKRKSPSLDWTTRFHIITNVVKGLLYLHEEAPARIIHRDIKASNILLDEQLNPKISDFGLARLFPGDDTHLNTFKIAGTYGYMAPEYALRGYLSVKSDVFSFGILVLEIVSGRKNHEKELGVQKADLLGYAWSLYQEGKILELVDQSLTKCNADEAAMCIQLGLLCCQASVADRPDMNTIHLMLSSDSFTLPRPGKPGLLGRGARRTTTSTSAFTNTNTASTQTCVTRVSAGSNSLVEDYSRNSISVSSIDEGR 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12558296 12561294 - Sed0016043.1 Sed01g1725 701029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1725 389 SUPERFAMILY Protein kinase-like (PK-like) 35 337 IPR011009 -
Sed01g1725 389 Gene3D Transferase(Phosphotransferase) domain 1 125 325 - -
Sed01g1725 389 FunFam Cysteine-rich receptor-like protein kinase 2 17 124 - -
Sed01g1725 389 FunFam Cysteine-rich receptor-like protein kinase 41 125 325 - -
Sed01g1725 389 Pfam Protein tyrosine and serine/threonine kinase 52 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1725 389 CDD STKc_IRAK 55 319 - -
Sed01g1725 389 Gene3D Phosphorylase Kinase; domain 1 25 124 - -
Sed01g1725 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1725 389 ProSiteProfiles Protein kinase domain profile. 49 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1725 389 SMART serkin_6 49 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1725 389 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 333 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1725 Sed-Chr1:12558296 Sed14g1379 Sed-Chr14:22550722 8.20E-95 dispersed
Sed01g1725 Sed-Chr1:12558296 Sed04g3313 Sed-Chr4:43400275 3.30E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78621 PF07714 PK_Tyr_Ser-Thr 1.50E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1725 - - - 0.0