Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1731 ATGAAAATATCACTAAACCCTAAACCCATCACTATCTTCTTCTTCTTCTTCTTCATCAGGCTGCATCTTTCGCCATGTTTGGCCATCGATTTATTCAAAGCTTGCAGTGTGAGTTACAATTGCGGCGAATTGGTAAACATCACGTACCCCTTCTGGGGAAATCAGCGGCAGAGATTTTGCGGGCAGCCAGAATTGGAGCTCAACTGCAAACCCGACCGAACCACTACGATTAAAATCAATTCCACGGAATACAAAGTTCTGAGAGTCGACCAATCGGATCGTAAAATGAGAATCGCAATATCACAAGTGTTCAACGGTATCTGCCTGAAGGACACAGATGAAATGATCCAAATTCCTACGACTCTGGATGGGGAAGGAGGGTTCACGTATTCGTGGAACAACGAGGGCATAACAGTGTGGTACAATTGCTCGGCGAAGGAGAATATGCCGGTGAGTAACAGCTTCTCGTGCGGGTTCGAGACCGCTGGGATCGAGAATTATGCTTTCGGGCCTGGTTTCGAGCTGAAGGATAGGAGTGTGATCATGGAGGGGTGTGAAAAGAAATTGGATGTGATGGTTAGAGTGGCGGAGGCGAATGAGGAGGAGGAAGAAGCGAAGGAGAAGAACAGGACGGCGCTGCTAGAGAAGGTTGTGAGACGAGGGTTCGACGTCGAATATGAGGGGAGCTTGATGTTGTGCAATTCGTGTGAACACGGCGGCGGAGTTTGCGGTGGAAACGCCTCTTACCCGTTTTACTGCATTTGTGCCACCGGAGATACAGAACCTTTTGTCTGCCGATCTGCTCCTGGAGCATCTTCCAATTTGTCGAAGAAAAAGTTAATTATAGTCGTAATTCCTGCCGGATGCATCCTTTTGATAATCTCCATCATCATCTTCATCTGCTACAGATGGAAATGCATTGTAAACAGAGAAAAAATTGAAAAAATTATGAAGAGACATTCTACCGAATTACCAAAGCGCTATAGTTACTCAAAGCTCAAGAAAATAACCGAATCCTTCAAGAACAAGCTTGGCCAAGGGGGATTTAGTACCGTCTACAAAGGAATATTACCAGATGGTCGCAAAGTGGCAGTGAAAATTTTGAATGATACAACAGAAGATGGTCAAGATTTTATGAATGAAGTTGTAAGTATTACCAGAACTTCCCATGTAAATATAGTCACTCTTTTGGGTTTCTGCTACGAGCAGAATAAGAGGGCTTTGATTTATGACTATATGCCCAAAGGGTCTTTGGAAAAGTACATATCTCACAAGGGGCATGAACAAAATAATGCCAAGTTGGATTGGAACACTCTCAATTGCATTGTCATGGGCATCGCTCGAGGTCTAGAATACTTGCATCGTGGCTGCAATACAAGGATTTTGCATTGTGACATCAAACCACACAACATTCTCTTGGATAATGACTTCAGCCCCAAGATATCAGACTTTGGGCTTGCAAAGCAATGCCGGACAAAAGAGAGTCACGTGTCGATGACAGGTGTAAAGGGGACGGCAGGATTCATGGCGCCCGAAATAGTGTTTAGGAATTTGGGAAAGGTTTCCCACAAATCTGATGTTTATAGTTATGGAATGTTGGTTCTTGAAATGGTGGGTGAAAGAAAGAGTCCGAATAATAAAGGAGTTGGGGAGAAGAGCGAAGAGTATTTTCCTGATTGGATATATAAGGATCTTGATGACAAAAGAAAGTAG 1713 43.84 MKISLNPKPITIFFFFFFIRLHLSPCLAIDLFKACSVSYNCGELVNITYPFWGNQRQRFCGQPELELNCKPDRTTTIKINSTEYKVLRVDQSDRKMRIAISQVFNGICLKDTDEMIQIPTTLDGEGGFTYSWNNEGITVWYNCSAKENMPVSNSFSCGFETAGIENYAFGPGFELKDRSVIMEGCEKKLDVMVRVAEANEEEEEAKEKNRTALLEKVVRRGFDVEYEGSLMLCNSCEHGGGVCGGNASYPFYCICATGDTEPFVCRSAPGASSNLSKKKLIIVVIPAGCILLIISIIIFICYRWKCIVNREKIEKIMKRHSTELPKRYSYSKLKKITESFKNKLGQGGFSTVYKGILPDGRKVAVKILNDTTEDGQDFMNEVVSITRTSHVNIVTLLGFCYEQNKRALIYDYMPKGSLEKYISHKGHEQNNAKLDWNTLNCIVMGIARGLEYLHRGCNTRILHCDIKPHNILLDNDFSPKISDFGLAKQCRTKESHVSMTGVKGTAGFMAPEIVFRNLGKVSHKSDVYSYGMLVLEMVGERKSPNNKGVGEKSEEYFPDWIYKDLDDKRK 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12608740 12613058 + Sed0028130.1 Sed01g1731 701035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1731 570 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Sed01g1731 570 Pfam Wall-associated receptor kinase galacturonan-binding 35 99 IPR025287 GO:0030247(InterPro)
Sed01g1731 570 SUPERFAMILY Protein kinase-like (PK-like) 318 543 IPR011009 -
Sed01g1731 570 Gene3D Phosphorylase Kinase; domain 1 310 412 - -
Sed01g1731 570 FunFam serine/threonine-protein kinase PBS1-like 307 412 - -
Sed01g1731 570 Gene3D Transferase(Phosphotransferase) domain 1 413 569 - -
Sed01g1731 570 PANTHER RUST RESISTANCE KINASE LR10-RELATED 256 567 IPR045874 GO:0004672(InterPro)
Sed01g1731 570 Coils Coil 188 216 - -
Sed01g1731 570 SMART serkin_6 338 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1731 570 FunFam Os07g0541700 protein 413 505 - -
Sed01g1731 570 Pfam Protein kinase domain 341 541 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1731 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1731 570 Pfam Wall-associated receptor kinase C-terminal 181 256 IPR032872 -
Sed01g1731 570 ProSiteProfiles Protein kinase domain profile. 338 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1731 Sed-Chr1:12608740 Sed01g1733 Sed-Chr1:12626684 1.70E-173 dispersed
Sed01g1731 Sed-Chr1:12608740 Sed01g1732 Sed-Chr1:12616575 3.90E-178 tandem
Sed01g1731 Sed-Chr1:12608740 Sed08g2192 Sed-Chr8:35805552 1.90E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78622 PF00069 Pkinase 2.40E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1731 - - - 0.0