Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1732 ATGTCCTTTCTAAATCCAAGCATGGTGAAGAGCATCTTCTTCATCATCTTCATCACTCGTCATGTTTCCGTGTGTGTAAGCCAAGACGCGCATGAGGAATTCAAAGCTTGCAGTGTGTATTACAACTGCGGGGAATTGGTTAACATCACGTATCCATTCTGGGGGGACAACCAGCAGCTGGAATCCTGCGGGCGGCCGAAATTCGGGCTGAACTGCAAAGACAACAAAACCACGAGCATTGTGATCAATGATCAGCAATTCAACGTTCTAAACATCAACCAAACGGATAACCGAATGACGATCGCAAGATCGGACCTGTTGGAGGATTACTGCCCTATAGAAGAGATCGAAACGGCGACGATGGATGAAAGTGTGTTCAGGTACTCGTGGAATAGCCGGAACATCTCCGTGTGGTATAATTGCAATGCAGAACATGGAGTTGGAGAGGAATTCAGGTTTGAATGTGAACATGGTGGCGCGAATTATGCTTTTGAAGCGGAGGAGGAGGATATGAATTTAGGCAGCCATAGTATTAGGGGGTGTACAGTGAAGATCCAAGTCATGATCATGGAGAATGTAGTGGAAGAAGGAAAGAGGAACAGAACGATGATGATGGAGAGAGGTTTGAGAGACGGGTTTGACGTTGAGTACGGGGATTGGGATACGACAGCGTGCGACGGATGCCGGGACAGTGGGGGCAACTGTGGAGGAAACTCAACCCACATGTTCTTTTGCATTTGTGGACATGGCCTAGATACACATCCTCACTATTGCAATTCTGTTCTTGTTCCTGCAAAATCAAATGCTTGGAAGAAGAAGGCAATCATCATAGGTGCAACTGCTTCCGGAAGCACCATTCTCATACTCTCCATTATCATCATCATCTCCAACAAATTCACAAGAAAAAACATCTCGAACAGACTTGAAATCGAGGAAATTATCAAGACATATTCCACACAAACACCCAAGCGATACAGCTACGCAAAGTTGAAGAAAATCACAGATTCTTTCAAGAACAAGCTTGGCCAAGGAGGATTTAGCACCGTGTACAGAGGAAAGCTACCAGATGGACGTGATGTGGCAGTTAAACTTCTCAAGGAGTTCAAAGATAATGGCCAAGATTTTATCAATGAGGTTGTTAGCATCTCAAAAGCTTCCCATGTAAATGTAGTCACGCTCTTAGGTTTCTGCTATGAGGGCAAAAAAAGAGCTTTGATTTATGAATATATGCCTAAAGGGTCATTGGATAAGTACATATCTCCAAAAGGGCTACAGAAAAATGATGTGAAGTTGGATTGGAACACACTTTATAACATCCTTATTGGCGTGGCGCGAGGCTTGGAGTATTTGCATCGTGGTTGTAACACAAGGATCTTGCATTTTGATATCAAACCACACAACATTCTTTTGGACAATGACTTTTGCCCCAAGATCTCAGACTTTGGGCTAGCCAAGCAATGCTTGGCCAAGGAGAGCCACGTATCGATGACAGGCGTGAAGGGGACGGCGGGATTCATAGCGCCCGAAGTAATATTTAGAAATTTCGGTAAGGTTTCACATAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGTGAAAGGAAGAATCCCAATGAAGGAATGGGGGAAAGTAGTGAAGAGTACTTTCCTGATTGGATATATAAAAATCTTAGAGAGGATGAAAGAAACGGAGGTTGTGGGTGGAGCAACACAGAGGAAGAAGAAGAAATGACAAGAAAAATGATCATTGTGGGGTTGCATTGCATTCAGACAGTTCCCAACGACAGGCCGTCGATGACTGATGTGGTTGTGATGTTGGAAGGGAGTGTTGATGCCTTACAGATTCCAGCAAAAACCAACATGTTGGTACCTCCTGTGATTGAGCAGCCCCAACTATGCTCTTCTTCTTCATCGAAATCGTACTAA 1938 44.01 MSFLNPSMVKSIFFIIFITRHVSVCVSQDAHEEFKACSVYYNCGELVNITYPFWGDNQQLESCGRPKFGLNCKDNKTTSIVINDQQFNVLNINQTDNRMTIARSDLLEDYCPIEEIETATMDESVFRYSWNSRNISVWYNCNAEHGVGEEFRFECEHGGANYAFEAEEEDMNLGSHSIRGCTVKIQVMIMENVVEEGKRNRTMMMERGLRDGFDVEYGDWDTTACDGCRDSGGNCGGNSTHMFFCICGHGLDTHPHYCNSVLVPAKSNAWKKKAIIIGATASGSTILILSIIIIISNKFTRKNISNRLEIEEIIKTYSTQTPKRYSYAKLKKITDSFKNKLGQGGFSTVYRGKLPDGRDVAVKLLKEFKDNGQDFINEVVSISKASHVNVVTLLGFCYEGKKRALIYEYMPKGSLDKYISPKGLQKNDVKLDWNTLYNILIGVARGLEYLHRGCNTRILHFDIKPHNILLDNDFCPKISDFGLAKQCLAKESHVSMTGVKGTAGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGERKNPNEGMGESSEEYFPDWIYKNLREDERNGGCGWSNTEEEEEMTRKMIIVGLHCIQTVPNDRPSMTDVVVMLEGSVDALQIPAKTNMLVPPVIEQPQLCSSSSSKSY 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12616575 12618994 - Sed0026675.1 Sed01g1732 701036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1732 645 Pfam Wall-associated receptor kinase C-terminal 162 248 IPR032872 -
Sed01g1732 645 SUPERFAMILY Protein kinase-like (PK-like) 315 611 IPR011009 -
Sed01g1732 645 FunFam serine/threonine-protein kinase PBS1-like 304 409 - -
Sed01g1732 645 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524(InterPro)
Sed01g1732 645 Gene3D Transferase(Phosphotransferase) domain 1 410 624 - -
Sed01g1732 645 ProSiteProfiles Protein kinase domain profile. 335 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1732 645 FunFam PR5-like receptor kinase 410 622 - -
Sed01g1732 645 SMART serkin_6 335 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1732 645 Pfam Protein tyrosine and serine/threonine kinase 337 608 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1732 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 261 625 IPR045874 GO:0004672(InterPro)
Sed01g1732 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1732 645 Pfam Wall-associated receptor kinase galacturonan-binding 37 103 IPR025287 GO:0030247(InterPro)
Sed01g1732 645 Gene3D Phosphorylase Kinase; domain 1 309 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1732 Sed-Chr1:12616575 Sed08g2195 Sed-Chr8:35822251 5.90E-191 dispersed
Sed01g1731 Sed-Chr1:12608740 Sed01g1732 Sed-Chr1:12616575 3.90E-178 tandem
Sed01g1732 Sed-Chr1:12616575 Sed01g1733 Sed-Chr1:12626684 6.60E-291 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78623 PF07714 PK_Tyr_Ser-Thr 3.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1732 - - - 0.0