Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1733 ATGAGAAACCAAGCCTCATTGATAAACCCCAGAATGGTCAGCATCATCTTCTTCATCTTCATCGTGGCTGTTCATGTTTCTGTATGTTTCAGCCAAGACTTCCACGAGGAATTCAAAGCATGCGGTGTGTATTACAACTGCGGGGAATTGGTCCACATCGGGTACCCGTTCTGGGGGAACGAGCGCCACAAAATCTGCGGCCGCCAAAATTTCGAGCTGATATGCAGAAACAACGAAACCACGAGGATTGTGATCAATGATCAGGAATTTAACGTTCTGAACATCAACCAATCGGGTCATAGAATGACGATCGCGAGATCTGAGCTGTTGGATGATTACTGCCCGAAATATGAAATCAAAACGGCGAGGCTGGATGAAAGTCTGTTCGTGTATGCGTCGAATAGTCGGAACATCACGGTGTGGTATAATTGCTCTGCAGAACGTGGAGTCCCAGATGAATTCAGGTTTGATTGTGAGAACGGGAGCGTGAATTATGCCTTTGAAGAAGTGGAGGAGGAGATGAATTGGAGCAGCAAAATAATTAGGGAGTGTACAGTGAAGATCCAGGTAGCGGTTACGGTGGAGGTGTTGGAAGAAGAAAGGAAGAACAGAACGGCGCTTGTGGAGAAGGGTCTGAGAGAGGGGTTTGAAGTTGAGTACAGCGATTGGCACACCGCTGCGTGCGAGGGGTGCAGTCAAAGTTGGGGCAAATGTGGAGCAAACTCCACCCACCCCTTTTTCTGCATTTGTGGCCCGGATATACATCCTTACTTCTGCAACAATTCTGCTTCTGCTTCTGGAAAACAAAATGGTTTGAAGTTGAAGGCCATCATAGGTGCAACTGTTTCGGCAACCACCATTCTCATAATCTCCATTATCATCATCATCTCCATCAAATCCACAAGAAAAGGAATCTCAAACAAAGATAAAATTGAAGAAATTATCAGGACATATTCCACACAAACACCCAAGCGATACAGCTACTCAAAGTTGAAGAAAATCACAAATTCTTTCAACAACAAGCTTGGCCAAGGAGGATTTAGCACTGTGTATAGAGGAAAGCTTCCAGGTGGGCATGATGTGGCAGTCAAACTTCTCAATGAGTTCAGAGATAATGGCCAAGATTTTATCAATGAGGTTGTTAGCATCACAAAAGCTTCCCATGTAAATGTAGTCTCGCTCTTAGGTTTATGTTATGAGGGGAAAAAAAGAGCTTTGATTTATGAATATATGCCTAAAGGGTCGTTGGATAAGTACATATCTCCTAAAGGGTTACACAAAAATGATGTGGAGTTGGATTGGAACACACTTTATAACATCATTATTGGCGTGGCACGAGGCTTAGAGTATTTGCATCGTGGTTGTAACACAAGGATCTTGCATTTTGATATCAAACCACACAACATTCTTTTGGACAATGACTTTTGTCCCAAGATTTCAGACTTTGGGCTTGCCAAGCAATGCAGAGCAAAAGAAAGTCACGTGTCGATGACAGGCGTGAAGGGGACGGCGGGATTCATAGCACCCGAATTAATATTTAGAAATTTTGGTAAAGTTTCACATAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGTGAAAGAAAAAATCCCAATGAAGGGATGGGGGAAACTAGTAGTGAAGATTACTTTCCTGATTGGATATATAAAAATCTTAGAGAAGATGAAAGAAATGGAGGTTGTGGGTGGGGCAACCCAGAGGAAGAAGAAATGGCAAGAAAAATGATCATTGTGGGGCTGCATTGCATTCAAACAATTCCCGACGACAGGCCGTCGATGACTGATGTGGTTGTGATGTTGGAAGGGAGTGTTGATGCCTTACAGATTCCACCAAAACCCAACATGTTGGGACCTCCTGCGACTGAGCAGTCCCAACTTTGTTCTTCTTCATCAAACTCGTACTAA 1938 43.4 MRNQASLINPRMVSIIFFIFIVAVHVSVCFSQDFHEEFKACGVYYNCGELVHIGYPFWGNERHKICGRQNFELICRNNETTRIVINDQEFNVLNINQSGHRMTIARSELLDDYCPKYEIKTARLDESLFVYASNSRNITVWYNCSAERGVPDEFRFDCENGSVNYAFEEVEEEMNWSSKIIRECTVKIQVAVTVEVLEEERKNRTALVEKGLREGFEVEYSDWHTAACEGCSQSWGKCGANSTHPFFCICGPDIHPYFCNNSASASGKQNGLKLKAIIGATVSATTILIISIIIIISIKSTRKGISNKDKIEEIIRTYSTQTPKRYSYSKLKKITNSFNNKLGQGGFSTVYRGKLPGGHDVAVKLLNEFRDNGQDFINEVVSITKASHVNVVSLLGLCYEGKKRALIYEYMPKGSLDKYISPKGLHKNDVELDWNTLYNIIIGVARGLEYLHRGCNTRILHFDIKPHNILLDNDFCPKISDFGLAKQCRAKESHVSMTGVKGTAGFIAPELIFRNFGKVSHKSDVYSYGMLVLEMVGERKNPNEGMGETSSEDYFPDWIYKNLREDERNGGCGWGNPEEEEMARKMIIVGLHCIQTIPDDRPSMTDVVVMLEGSVDALQIPPKPNMLGPPATEQSQLCSSSSNSY 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12626684 12629298 - Sed0022156.1 Sed01g1733 701037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1733 645 SUPERFAMILY Protein kinase-like (PK-like) 312 612 IPR011009 -
Sed01g1733 645 MobiDBLite consensus disorder prediction 619 645 - -
Sed01g1733 645 Gene3D Phosphorylase Kinase; domain 1 308 410 - -
Sed01g1733 645 MobiDBLite consensus disorder prediction 629 645 - -
Sed01g1733 645 Pfam Wall-associated receptor kinase C-terminal 159 250 IPR032872 -
Sed01g1733 645 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524(InterPro)
Sed01g1733 645 ProSiteProfiles Protein kinase domain profile. 336 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1733 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1733 645 Gene3D Transferase(Phosphotransferase) domain 1 411 620 - -
Sed01g1733 645 Pfam Wall-associated receptor kinase galacturonan-binding 46 106 IPR025287 GO:0030247(InterPro)
Sed01g1733 645 Pfam Protein tyrosine and serine/threonine kinase 338 609 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1733 645 FunFam serine/threonine-protein kinase PBS1-like 305 410 - -
Sed01g1733 645 FunFam PR5-like receptor kinase 411 623 - -
Sed01g1733 645 SMART serkin_6 336 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1733 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 231 630 IPR045874 GO:0004672(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1731 Sed-Chr1:12608740 Sed01g1733 Sed-Chr1:12626684 1.70E-173 dispersed
Sed01g1733 Sed-Chr1:12626684 Sed08g2195 Sed-Chr8:35822251 7.80E-191 dispersed
Sed08g2197 Sed-Chr8:35831885 Sed01g1733 Sed-Chr1:12626684 1.00E-42 dispersed
Sed01g1732 Sed-Chr1:12616575 Sed01g1733 Sed-Chr1:12626684 6.60E-291 tandem
Sed01g1733 Sed-Chr1:12626684 Sed01g1734 Sed-Chr1:12630512 8.90E-163 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78624 PF07714 PK_Tyr_Ser-Thr 3.80E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1733 - - - 0.0