Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1734 ATGAAAACTCCGGTCTCTCTGTTTTTTGTGTTCTTCACAATCATCTGGTTCGATGGTCGGCCATCCTCCGGCGATGCCTTCCACGAGGAATTCAAAGCATGCGGTGTGTATTACAACTGCGGGGAATTGGTCCACATCGGGTACCCGTTCTGGGGGAACGAGCGCCAAAAAATCTGCGGCCGCCAAAATTTCGAGCTGATTTGCAAAAACAACGAAACCACGAGGATTGTGATAAACGATCAGGAATTTAACGTTCTAAACATCAACCAAAGGGATAATAGAATGACGATCGCGAGATCGGATCTGCTGGATGATTACTGCCCTAACTATGAAATCAAAACGGCGACGATGGATGAAAGGCTATTCGTGTACTCGTCGAAGGATCGGAACATCACGGTGTGGTATAATTGCTCTGCAGAACGTGGAGTCCGAGATGAATTCAGGTTTGATTGTGAGAATGGGAGCGTGAATTACGCCTTTGAAAGTGAGGTGGATATGAATTGGAGCAGCAAAATAATTAGGGAGTGTAAAGTGAAGATCCAGGTAGCGGTTACGGTGGAGGTGTTGGAAGAAGAAAGGAAGAACAGAACGGCGCTTGTGGAGAAGGGTCTGAGAGAGGGGTTTGAAGTTGAGTACAGCGATTGGCATACGGCTGCGTGCGAGGGGTGCAGTCAAAGTGGGGGCAAATGTGGAGCAAACTCCACCTACTACCCCTTTTTCTGCATTTGTGGCCCGGATATACATCCTTACTTCTGCAACTATTCTGCTTCTGCTTCTGGGAAAAATGATCACTGGAAGAAGCCCGTCATAGGTGTTTGCTCTGGTATTGGAGGCATAATGACAATGTGTGTAGTGTTTTTCATCTGGTTTCGTTTCCACAAAAAGAAGCTTGCTCGTTCTTATACTCCCACCTCCTTTCTTCTACGCCACAATTCAAGAGAACCACCAGTGACGGAACTCGAGAACGGAGAAAATTATATGGGTGTACCTGTGTTCTCTTATGAAGAGCTTGAAAAGGCCACAGACAGATTTAATCCGGCCAAAGAACTTGGAGATGGTGGCTTTGGCACTGTGTACTATGGCAAACTCCAAGATGGACGTGAGGTTGCAGTTAAACGATTGTTCGAAAATAACTACAGACAAGTTGAGCATTTCATGAATGAAGTTGAGAGCCTTACACGTTTGCGCCATCCGCATCTAGTCACCCTTTATGGTTGCACCTCTCGACGTAGCCGCGAACTCTTGCTGGTTTATGAATTCATTGCCAATGGTACTGTCGCCGATCATCTTCATGGGAACCGAGCAAAACCGGGTGAGCTTCCATGGCATACAAGGTTGAAGATTGCCATAGAGACCGCAAGTGCTCTAGCTTTTCTCCATGCTTCTGATACCATCCACCGTGACGTTAAAACCACCAACATTCTCCTTGACAGCAACTTTGGGGTTAAAGTGGCCGATTTTGGACTATCTCGCCTTTTTCCTAACCAAGCCACCCATATTTCAACTGCTCCACAAGGAACTCCTGGCTACCTCGATCCGGAGTATCATGAATGTTATCAACTTACAAATAAAAGTGATGTCTTTAGCTTCGGAGTCGTCTTGGTTGAACTGATATCTTCCAAGGCAGCCGTTGATATCACAAGGCACAGACATGAAATTAACTTGTGGACAATGGCAATCAACAAGATCCGAAACGACGAATTACACGACTTTGTTGACCCGTCTCTTGGATTTGAAGCAGATGAAAGAGTCAAAGAAATGATATGTGCAGTTGCAGAGCTGGCGTTTCGATGCTTGCAAAGTGTGAAGGACACAAGGCCGTCGATGTTGGAGGCTTTGAAAATTCTAAAGAACATAGAGAGTCGGAGTCGTGGTAAAGGAAATGCAGAAGACAATTCAGTAGAAGAAGATGTGCTCCTGAAAAGTGGTTTAGTGCCACAATCTCCAGATTCTGTTGTCGTGCCTTGGATGAGCAAATCTTCAACACCAAATGGTAGTGGCTAA 2004 45.76 MKTPVSLFFVFFTIIWFDGRPSSGDAFHEEFKACGVYYNCGELVHIGYPFWGNERQKICGRQNFELICKNNETTRIVINDQEFNVLNINQRDNRMTIARSDLLDDYCPNYEIKTATMDERLFVYSSKDRNITVWYNCSAERGVRDEFRFDCENGSVNYAFESEVDMNWSSKIIRECKVKIQVAVTVEVLEEERKNRTALVEKGLREGFEVEYSDWHTAACEGCSQSGGKCGANSTYYPFFCICGPDIHPYFCNYSASASGKNDHWKKPVIGVCSGIGGIMTMCVVFFIWFRFHKKKLARSYTPTSFLLRHNSREPPVTELENGENYMGVPVFSYEELEKATDRFNPAKELGDGGFGTVYYGKLQDGREVAVKRLFENNYRQVEHFMNEVESLTRLRHPHLVTLYGCTSRRSRELLLVYEFIANGTVADHLHGNRAKPGELPWHTRLKIAIETASALAFLHASDTIHRDVKTTNILLDSNFGVKVADFGLSRLFPNQATHISTAPQGTPGYLDPEYHECYQLTNKSDVFSFGVVLVELISSKAAVDITRHRHEINLWTMAINKIRNDELHDFVDPSLGFEADERVKEMICAVAELAFRCLQSVKDTRPSMLEALKILKNIESRSRGKGNAEDNSVEEDVLLKSGLVPQSPDSVVVPWMSKSSTPNGSG 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12630512 12642690 - Sed0018062.1 Sed01g1734 701038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1734 667 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 662 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed01g1734 667 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1734 667 MobiDBLite consensus disorder prediction 653 667 - -
Sed01g1734 667 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524(InterPro)
Sed01g1734 667 FunFam Wall-associated receptor kinase-like 20 421 629 - -
Sed01g1734 667 SUPERFAMILY Protein kinase-like (PK-like) 326 620 IPR011009 -
Sed01g1734 667 Gene3D Transferase(Phosphotransferase) domain 1 421 641 - -
Sed01g1734 667 Pfam Wall-associated receptor kinase galacturonan-binding 39 99 IPR025287 GO:0030247(InterPro)
Sed01g1734 667 SMART serkin_6 344 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1734 667 MobiDBLite consensus disorder prediction 648 667 - -
Sed01g1734 667 Pfam Wall-associated receptor kinase C-terminal 159 244 IPR032872 -
Sed01g1734 667 Pfam Protein tyrosine and serine/threonine kinase 347 612 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1734 667 Gene3D Phosphorylase Kinase; domain 1 317 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1734 Sed-Chr1:12630512 Sed08g2196 Sed-Chr8:35825832 1.00E-217 dispersed
Sed01g1733 Sed-Chr1:12626684 Sed01g1734 Sed-Chr1:12630512 8.90E-163 tandem
Sed08g2197 Sed-Chr8:35831885 Sed01g1734 Sed-Chr1:12630512 3.20E-44 transposed
Sed01g1734 Sed-Chr1:12630512 Sed12g2091 Sed-Chr12:31645635 1.40E-150 wgd
Sed01g1734 Sed-Chr1:12630512 Sed08g2195 Sed-Chr8:35822251 4.20E-83 wgd
Sed01g1734 Sed-Chr1:12630512 Sed08g0367 Sed-Chr8:2214851 5.30E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78625 PF07714 PK_Tyr_Ser-Thr 4.40E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1734 - - - 0.0