Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1757 ATGGGCATTAAAGACCTCCTCAGATTCATGAAGCCCTACATTGAACCCATTCATATCAAGAAATACGCGGGAAAACGTGTGGGTATTGATGCGTATTCGTGGCTGCACAAGGGAGCATATTCGTGTAGTATGGAGATTTGTCTTAATTCTGATAGTGATAAGAAATGGCGATACTTAGACTACTGTATGCACAGAATCAATCTGCTTCGCCATTACAAGATAGTCCCTGTTGTTGTTTTTGATGGTGGGAATGTTCCTTGTAAGGCCGCTACCGAGCAAGAGCGGCACAAAAGAAGAGAGGCAAACAGGGAATTGGCAATGGAGAAGTTGAAAGAAGGGAATGTTTGTGCTGCAACTGAGCTTTTCCAGCGAGCGGTGAATATTACTCCCTCCATAGCAAATCAGCTAATAAAGCTTCTTAGAGAACACAACATTGAATTTGTGGTAGCCCCATATGAGGCTGATGCACAGTTAGCCTATCTTTCTAGCCTTGAAACACAAAACGGAGGAATTGCTGCTGTCATTACAGAGGACAGTGACCTCATTGCATATGGTAGTAAAGCTACAATCTTTAAGATGGACCGATTCGGAAATGGCGAAGAGATGATACTAGACAAGATTTTTGACTCCGCCGGCACCACGCCTTCCTTCAGAAACTTTGATATGGAATTGCTCACGGGCATGTGTGTCTTAGCTGGCTGTGATTTTCTCCCTTCTGTTCCTGGAATTGGCATTGCAAAGGCTTATGCCTTGGTCTCTAAGTATCGAAATTTGGAACGTGTTTTATCTGTTTTGAAGCTTGAGAAAAGGAAACAAATGCCTGAAGATTACTTCAAGCTTTTCAGACAAGCTATGGCAGTTTTTCAGCATGCACAGATATATGATGCTGAAACGAGAAAGCTTAGACACATGAAACCACTTCCTTTAGAGCTCCTGCAATCCCTAGGTGAAGAAATTGATTTTTTGGGACCAGATATGCCCCCTTCAATAGCTGCGTCAATTGGCGAAGGAAGGTTGAACCCCATAACTATGGAGGCCTTTGACTATTTCCCAAGTAATGAACGTCGTCAAGATCTTATGAAAATCAAGAACGAGAGACTTCCACAGCCTGAAGCATCTGAGTTACCTGCGAAAGAGAGCTGTTTTATGGTCATTGTGAGTAAGGACAGAGAAAGACATATCCCGGATAAGAGAATTAAACCCGTTGTAAATGAAAAGAATCCCATAGAAGAATTAGCACTTGAAAAGCTGAGTATACCACTCAACGTTCAAAGAACAAATGAAGACAAAAACGTTGTTGACTACAAGTCATTAAAGGTTCCGGACAACAATCCATTCAAGAGAAGGAAAGATGATGAGTTGCACTTAGATCTAACACAGAGTGCTGATGAAGAACTTGTGGTCATAAGTGAGGATGAATTTGAGGAACTATCATGTGAGACTCCAGATAACTTAATCATAAAATCTTACAAGAAAAGAAAACTGGACAAAGCTCTGTCCAATGAAATGGATAATTCTACTGAGCTTATATCAGAGCTGACCCAGGAAGAAGATTTGGTGCTGTTAGAACATACACCAGGATCCCAAAAGAGTGTAAGCTCAAAGACAAGCTGTGTCATTGGTAGAAAAAGAGTTGTTGGCAAAGAGAACAAGAGAAAAAGTAACTCTAATACCTCAGGTACTATAAAAAATAGTTTATTGAACTTTTTCTCTAGAGTTTGA 1722 40.82 MGIKDLLRFMKPYIEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMEICLNSDSDKKWRYLDYCMHRINLLRHYKIVPVVVFDGGNVPCKAATEQERHKRREANRELAMEKLKEGNVCAATELFQRAVNITPSIANQLIKLLREHNIEFVVAPYEADAQLAYLSSLETQNGGIAAVITEDSDLIAYGSKATIFKMDRFGNGEEMILDKIFDSAGTTPSFRNFDMELLTGMCVLAGCDFLPSVPGIGIAKAYALVSKYRNLERVLSVLKLEKRKQMPEDYFKLFRQAMAVFQHAQIYDAETRKLRHMKPLPLELLQSLGEEIDFLGPDMPPSIAASIGEGRLNPITMEAFDYFPSNERRQDLMKIKNERLPQPEASELPAKESCFMVIVSKDRERHIPDKRIKPVVNEKNPIEELALEKLSIPLNVQRTNEDKNVVDYKSLKVPDNNPFKRRKDDELHLDLTQSADEELVVISEDEFEELSCETPDNLIIKSYKKRKLDKALSNEMDNSTELISELTQEEDLVLLEHTPGSQKSVSSKTSCVIGRKRVVGKENKRKSNSNTSGTIKNSLLNFFSRV 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12790694 12796200 + Sed0024498.1 Sed01g1757 701061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1757 573 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788(InterPro)
Sed01g1757 573 Pfam XPG I-region 144 235 IPR006086 GO:0004518(InterPro)
Sed01g1757 573 SMART xpgineu 141 217 IPR006086 GO:0004518(InterPro)
Sed01g1757 573 SMART HhH_4 222 255 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Sed01g1757 573 FunFam Exonuclease 1, putative 1 213 - -
Sed01g1757 573 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Sed01g1757 573 SMART xpgn3 1 102 IPR006085 GO:0004518(InterPro)
Sed01g1757 573 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 358 IPR036279 -
Sed01g1757 573 Coils Coil 496 516 - -
Sed01g1757 573 CDD PIN_EXO1 1 209 IPR044752 GO:0046872(InterPro)
Sed01g1757 573 Gene3D - 218 291 - -
Sed01g1757 573 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Sed01g1757 573 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Sed01g1757 573 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Sed01g1757 573 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Sed01g1757 573 CDD H3TH_FEN1-like 223 295 - -
Sed01g1757 573 Pfam XPG N-terminal domain 1 101 IPR006085 GO:0004518(InterPro)
Sed01g1757 573 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 507 IPR006084 GO:0017108(PANTHER)
Sed01g1757 573 Gene3D - 1 211 - -
Sed01g1757 573 FunFam exonuclease 1 218 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1757 K10746 - - csv:101208542 881.708
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1757 Sed-Chr1:12790694 Sed08g2705 Sed-Chr8:39016346 1.90E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30